PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037242.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HSF

Protein Properties

Length: 505aa MW: 56207.9 Da PI: 4.6056

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037242.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.2	4.2e-36	21	112	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+++nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+++ Pbr037242.1 21 FLNKTYDMVDDPSTDTVVSWSKSNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTVS 108 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Pbr037242.1 109 RRKP 112 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.9E-39	14	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.07E-34	17	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.1E-62	17	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.7E-31	21	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-20	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-20	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	60	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-20	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MERVEDVASV FNSANTPPPP FLNKTYDMVD DPSTDTVVSW SKSNNSFVVW NVPEFSRDLL 60 PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLKTVSRR KPAHVQNHQQ 120 QPPQVQSSQV GACVDVGNPG LEEEVESLKR DKNSLMQELV RLRQQQQATE NQLHNVGQRM 180 QGMEQRQQQM MSFLAKAMHN PGFLSQLVQH QNENNRLITG SNKKRRLPRQ EDEILVGNLG 240 SKVLDGQMVK YQPSMNEAAK AMLRQILKMN TSPKLEPSMI NPDAFLIDNV PSNATDSMNT 300 SSRILGVTLS EVPPISAECD MPDESIFPVS CHSTGISEVQ SSPFAVSNSV KETQVLEENM 360 LNFQQDPVIP ELTQMQGIVP ESNVEIPNAN FINSETGNAG YMGMSAGLDG RLPTDIDPFS 420 PEPDAETLPD GVSSLPSIND IFWEQFLTAS PLPGDTDEIS LSSDDGVTVN QDLQLGKENG 480 LDKSQHMNYI TEQMQLLASG SRIG*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MERVEDVASV FNSANTPPPP FLNKTYDMVD DPSTDTVVSW SKSNNSFVVW NVPEFSRDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLKTVSRR KPAHVQNHQQ  120
QPPQVQSSQV GACVDVGNPG LEEEVESLKR DKNSLMQELV RLRQQQQATE NQLHNVGQRM  180
QGMEQRQQQM MSFLAKAMHN PGFLSQLVQH QNENNRLITG SNKKRRLPRQ EDEILVGNLG  240
SKVLDGQMVK YQPSMNEAAK AMLRQILKMN TSPKLEPSMI NPDAFLIDNV PSNATDSMNT  300
SSRILGVTLS EVPPISAECD MPDESIFPVS CHSTGISEVQ SSPFAVSNSV KETQVLEENM  360
LNFQQDPVIP ELTQMQGIVP ESNVEIPNAN FINSETGNAG YMGMSAGLDG RLPTDIDPFS  420
PEPDAETLPD GVSSLPSIND IFWEQFLTAS PLPGDTDEIS LSSDDGVTVN QDLQLGKENG  480
LDKSQHMNYI TEQMQLLASG SRIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-26	19	110	27	129	Heat shock factor protein 1
5d5v_B	9e-26	19	110	27	129	Heat shock factor protein 1
5d5v_D	9e-26	19	110	27	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037242.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB853253	1e-138	AB853253.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH235.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344306.1	0.0	PREDICTED: heat stress transcription factor A-1b-like
Refseq	XP_009344307.1	0.0	PREDICTED: heat stress transcription factor A-1b-like
Swissprot	Q84T61	1e-160	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A498JRN8	0.0	A0A498JRN8_MALDO; Uncharacterized protein
STRING	XP_009344306.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1843	31	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-133	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]