PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037169.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 330aa    MW: 37060.9 Da    PI: 9.1403
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037169.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.4e-32206259255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pbr037169.1 206 PRMRWTTNLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 259
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-15203259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28204259IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23206259IPR006447Myb domain, plants
PfamPF002493.7E-7207258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSSSSSTSW RRSSHHSHQE EMDLGFWKRA LDSRNSTSDE  60
LSNTNHRPHH CSNITASTSC NGGNGNLFHP FQFQQSHYFP QVPQADVQQQ LQQSEDLLGC  120
LRPIRGIPLY QNPHPPRPPN NFFPFSSSQK PVNFDNNSAT STSTISSSTP LFQAAAYHHH  180
HQGHHGGLLR SRIFSRFPAK RSMRAPRMRW TTNLHARFVH AVELLGGHER ATPKSVLELM  240
DVKDLTLAHV KSHLQMYRTV KTTDKAAASS GQSDVYENAS SGDTTEDMMY ELQNPRRSCE  300
QLPSPQQGSR STTVQDNKEY YGLWSNSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16207261458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037169.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500236.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6165e-86KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A498HJ851e-173A0A498HJ85_MALDO; Uncharacterized protein
STRINGXP_009344144.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-72G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]