PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037115.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 521aa    MW: 58515.2 Da    PI: 6.4606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037115.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.4e-11327373455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Pbr037115.1 327 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVLYINQLK 373
                  899***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-3922219IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.85E-13321377No hitNo description
PROSITE profilePS5088815.643323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16326388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-16327388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEEIISSCSP PTFCQETSFT FQQRLQFMVQ NRSEWWVYSI FWQASKGSIS DQVSLSWAGG  60
HFWNTHDHLA SKRSSGVINS YQPKFGFSNG ERSKVINREV EDLLHDDMVD LDMRLVDRED  120
VTDSEWFYFY TLSLTQSFSA SQGNNSKNIV GRAFGSGGFV WLAGDHDFQF YECERVKEAR  180
MHGIQTLVCI ATPCGVLELA SLDVIKEDWG LVHLSKSLFG LDGNINMNNN NNKKKLSKQQ  240
TTRDGNVLVP ILENGLFSAA QKELIRQDQG GSKNEDAPIN LGESSPETPS DSVGNFTSEN  300
TENMTRLKKR GRSSNHGAAS RELQLSNHVE AERQRREKLN HRFYVLRSVV PNVSKMDRSS  360
LLADAVLYIN QLKSKVEELE AKVQEQTQKP KADNNANNNL DHHSSQSTSS IVDQHHYSYY  420
NISNNSNSNN NSNSDRAAAA AVEVDVKIMG SDVIIRVQCP DEDYPYAKLM NALKGLGLQV  480
YHASISSVKE FMVQDVVARL PYGFTGKEAL RNGIMKGWYS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-22112192192Transcription factor MYC3
4rqw_B9e-22112192192Transcription factor MYC3
4rs9_A9e-22112192192Transcription factor MYC3
4yz6_A9e-22112192192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037115.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359542.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498I7R10.0A0A498I7R1_MALDO; Uncharacterized protein
STRINGXP_009359542.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.17e-53bHLH family protein