PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037100.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 298aa    MW: 33370.1 Da    PI: 7.5265
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037100.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.41.1e-13220244226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ + +tGtC+y d+C+FaHg
  Pbr037100.1 220 KTELCNKWEETGTCPYRDNCQFAHG 244
                  9***********************9 PP
2zf-CCCH26.31.3e-08257282126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt lCr  +++G C+yG rC+F H+
  Pbr037100.1 257 YKTQLCRMVLAGGACPYGHRCHFRHS 282
                  9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-17215251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-10215250IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7218245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305218246IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9220244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-13252285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9252287IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136256284IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6257282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEPNTNTAFP NSPDSSRGFC SDFSSDFQPI YTLPSSLSLT PSTRSSFSDT DSDEHHHSTT  60
SLNQAQLVLE YEELRDHYDL CKSHLRNLTN ELNSIRRENA QLRSVNTDLV KLLSSQAAFQ  120
SFLPSSSSSS AYQSPTATSF LDRRLGFGSL GLGPQDGVVS EESSDISPTS VMERNRFIDA  180
DRISLPKSIS VRSSNRPRVP SVSRPMTQSQ MKVFNQGMLK TELCNKWEET GTCPYRDNCQ  240
FAHGVRELRP VMRHPRYKTQ LCRMVLAGGA CPYGHRCHFR HSLTEQEKLQ LAVSDSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22220285570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037100.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344133.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A498HHL70.0A0A498HHL7_MALDO; Uncharacterized protein
STRINGXP_009344133.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-47C3H family protein