PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr036964.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 667aa MW: 73338.5 Da PI: 4.5883 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.2 | 1.1e-12 | 298 | 320 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ Pbr036964.1 298 EDCSYYLKTGSCKFGSNCKFNHP 320 89********************9 PP | |||||||
2 | zf-CCCH | 31.7 | 2.6e-10 | 345 | 369 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG++C+++H++ Pbr036964.1 345 QTECKYYLRSGGCKYGENCRYSHSR 369 568********************95 PP | |||||||
3 | zf-CCCH | 34.2 | 4.3e-11 | 389 | 414 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G Cky ++C+F+H+ Pbr036964.1 389 PGERECPYYMRNGSCKYASNCRFNHP 414 5789*********************9 PP | |||||||
4 | zf-CCCH | 26 | 1.5e-08 | 525 | 551 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC++f rtG Ck+ ++Ck++H++ Pbr036964.1 525 PGQPLCSYFIRTGDCKFKSSCKYHHPK 551 589**********************96 PP | |||||||
5 | zf-CCCH | 34.6 | 3.3e-11 | 573 | 596 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ Pbr036964.1 573 QNICTHYSRYGICKFGPACKFDHP 596 679********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.62E-6 | 293 | 322 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-10 | 298 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 300 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.69 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-6 | 342 | 369 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 345 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-8 | 346 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-6 | 348 | 370 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 388 | 415 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.131 | 388 | 416 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-8 | 390 | 414 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 391 | 416 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 394 | 413 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.38 | 524 | 552 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-4 | 524 | 551 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-5 | 526 | 551 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 527 | 552 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 568 | 596 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 570 | 597 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 570 | 598 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 573 | 596 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MAISEAISLV PPDPETPSTS HAHSDQGFLP SSPNPALAPS GVDHAVLDEK LDLKEEGEDD 60 GEPDEVQKLD SIEKVEEDEA GELQKVDLKA EDEAGELQKV DLKAEDEAGG LQKVDLKAED 120 GAGELQKVEF YEGVEVPLNP TSVPLPVLSD RVPEIFDWNR TRDPALLHEI QQFDPAVEIR 180 NFEPSIVDEI RNFDRAFPSD LKAEEDGAGE FQKVDSKAEE GGEGVEEEEK SSGEQEVEIV 240 NGEKNERHSE QSEQSDGGEG WGGNQGWEED GGGVEEKKAV ETQESNRRYQ YPVRPEAEDC 300 SYYLKTGSCK FGSNCKFNHP VRRKPNQVPK ERVKDKDESA ENPSQTECKY YLRSGGCKYG 360 ENCRYSHSRE KPSVAPVLEL NFLGLPIRPG ERECPYYMRN GSCKYASNCR FNHPDPTTTG 420 GSNPPSGYGN GGRASLQGAS QSTVAPWSAP RPLNEAPVYS TLMIPPPQVV SSQNSEWNGY 480 QATAYVPERS MPARPPYMMN NSVAEANVYK QYPHQNQVEE FPERPGQPLC SYFIRTGDCK 540 FKSSCKYHHP KNHTAVAPTV VFSDKGLPLR PDQNICTHYS RYGICKFGPA CKFDHPLHIS 600 SSTTSGPDHR LPFSDSATTN GAGMAGSRNG TDVTSQPQPV QSRHLSGAVK MMENLGQVNL 660 GQPNGE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00582 | DAP | Transfer from AT5G63260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr036964.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018503668.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1 | ||||
TrEMBL | A0A498I3J3 | 0.0 | A0A498I3J3_MALDO; Uncharacterized protein | ||||
STRING | XP_008367485.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4156 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-122 | C3H family protein |