PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036964.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 667aa    MW: 73338.5 Da    PI: 4.5883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036964.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-12298320426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C+++++tG Ck+G++CkF+H+
  Pbr036964.1 298 EDCSYYLKTGSCKFGSNCKFNHP 320
                  89********************9 PP

2zf-CCCH31.72.6e-10345369327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C++++r+G CkyG++C+++H++
  Pbr036964.1 345 QTECKYYLRSGGCKYGENCRYSHSR 369
                  568********************95 PP

3zf-CCCH34.24.3e-11389414126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++r+G Cky ++C+F+H+
  Pbr036964.1 389 PGERECPYYMRNGSCKYASNCRFNHP 414
                  5789*********************9 PP

4zf-CCCH261.5e-08525551127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC++f rtG Ck+ ++Ck++H++
  Pbr036964.1 525 PGQPLCSYFIRTGDCKFKSSCKYHHPK 551
                  589**********************96 PP

5zf-CCCH34.63.3e-11573596326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C +++r+G+Ck+G+ CkF H+
  Pbr036964.1 573 QNICTHYSRYGICKFGPACKFDHP 596
                  679********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-6293322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094294322IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6294321IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10298320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5300320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69342370IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6342369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6345371IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8346369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6348370IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5388415IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131388416IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-8390414IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5391416IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4394413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38524552IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-4524551IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5526551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5527552IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6568596IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5570597IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943570598IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8573596IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAISEAISLV PPDPETPSTS HAHSDQGFLP SSPNPALAPS GVDHAVLDEK LDLKEEGEDD  60
GEPDEVQKLD SIEKVEEDEA GELQKVDLKA EDEAGELQKV DLKAEDEAGG LQKVDLKAED  120
GAGELQKVEF YEGVEVPLNP TSVPLPVLSD RVPEIFDWNR TRDPALLHEI QQFDPAVEIR  180
NFEPSIVDEI RNFDRAFPSD LKAEEDGAGE FQKVDSKAEE GGEGVEEEEK SSGEQEVEIV  240
NGEKNERHSE QSEQSDGGEG WGGNQGWEED GGGVEEKKAV ETQESNRRYQ YPVRPEAEDC  300
SYYLKTGSCK FGSNCKFNHP VRRKPNQVPK ERVKDKDESA ENPSQTECKY YLRSGGCKYG  360
ENCRYSHSRE KPSVAPVLEL NFLGLPIRPG ERECPYYMRN GSCKYASNCR FNHPDPTTTG  420
GSNPPSGYGN GGRASLQGAS QSTVAPWSAP RPLNEAPVYS TLMIPPPQVV SSQNSEWNGY  480
QATAYVPERS MPARPPYMMN NSVAEANVYK QYPHQNQVEE FPERPGQPLC SYFIRTGDCK  540
FKSSCKYHHP KNHTAVAPTV VFSDKGLPLR PDQNICTHYS RYGICKFGPA CKFDHPLHIS  600
SSTTSGPDHR LPFSDSATTN GAGMAGSRNG TDVTSQPQPV QSRHLSGAVK MMENLGQVNL  660
GQPNGE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503668.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBLA0A498I3J30.0A0A498I3J3_MALDO; Uncharacterized protein
STRINGXP_008367485.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-122C3H family protein