PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036963.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 1183aa    MW: 130726 Da    PI: 6.4296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036963.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06425447426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    C++++r+G CkyG++ k++H+
  Pbr036963.1 425 TKCKYYLRSGGCKYGENWKYSHS 447
                  57**************9999998 PP
2zf-CCCH26.61e-08463487226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  + ++C+++ r+G Cky  +C+F+H+
  Pbr036963.1 463 GKRECPYYIRNGSCKYALNCRFNHP 487
                  789*********************9 PP
3zf-CCCH35.71.4e-11857879527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C+++++tG Ck+G++CkF+H++
  Pbr036963.1 857 DCSYYLKTGNCKFGSNCKFNHPR 879
                  7********************96 PP
4zf-CCCH34.53.5e-11937961226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C++++rtGtCky  +CkF+H+
  Pbr036963.1 937 GEKDCPHYMRTGTCKYETNCKFNHP 961
                  7889********************9 PP
5zf-CCCH25.81.8e-0810951120126
                   --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                   +++++C++++r+G Cky ++C+ +H+
  Pbr036963.1 1095 PGERECPYHMRNGSCKYASNCRSNHP 1120
                   5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.854421449IPR000571Zinc finger, CCCH-type
SMARTSM003560.024421448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192461489IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026461488IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5463487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263852880IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5852879IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6852879IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9856879IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-5858877IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103935963IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6935962IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8937961IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5938962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4941960IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.09410481076IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-410481075IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.58710941122IPR000571Zinc finger, CCCH-type
SMARTSM003560.004910941121IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-510961120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1183 aa     Download sequence    Send to blast
MLSALRFLLP VSVSVLVAIY NYYKSRQKSE FSVGVEVPLN PTSGPSPAPS DLDHEILDWI  60
RTLDPAVLNR IRNPDPALLH EIQQFNPAVE IRNFDPSIVD RIRNLDPAFP SDFSESVDVP  120
QNPPSVPSPE PSVVEILDWI GTVGPAVLDE IQQFDPAFLD EDRSFDPSIV DGIRKLSLKE  180
KEKKAKEEEK GREAEREKEN ERERESEKSE SSSGGGGGNE NGGEVEEEVV EESSRRDQYP  240
LRLGDCWYYL RTGNCSPPLP DPSQRAVLRS ISSSFFLEFP QFSTRRLGFG DVRRAARCGC  300
WVLHGDGEGE GEGWVRQTFA RFPDGRRGGG RNPSEGGGNP SGENKKLMLT SSRPGIGSAD  360
FCWAACWPPP QPSGLFGMDR VFGEGGVKMG CCPAKRGRAG VALSICVPKE SIKDKDESAE  420
NPSQTKCKYY LRSGGCKYGE NWKYSHSKGK LELNFLGLPI RPGKRECPYY IRNGSCKYAL  480
NCRFNHPDPT ATGGSDPPSG NGNGGPASVQ GASQSTVAPW STPRPLNEDP VYSTLMIPPP  540
QVVSSQNSEW NGYQASAYAP ERSMPACPPY MMNNSMAETN VYKQHPHQNQ VEEFLERPGQ  600
PLCSYFLRKG SQQKPSNPVT ATVAAASAAA ISTKTMYFSA ARIALPVTVS VLVVIYKYFR  660
SGRKSELSEG VEVPLNPTSV PSPAPSDLER EILDWIRTLD PDMLNKIRNL DPALLDEIRN  720
FDPAFSSKFS ESVDGPLNPP SVPLPAPSDI DSEFLDWIRK LDPAVLDALQ SDPAFLDEIR  780
NFDPSIVDEI RKLSLKKKEE KEEEEKRRES EKKNEKERER ESSGGGGGNE NGGEVDKKVV  840
EESSRRNQYP LRPEAKDCSY YLKTGNCKFG SNCKFNHPRI RKNKQVSKGK AKKREELERE  900
QDQTESKYYI SPGRRIGVPS VAPALELNFL GLPIRPGEKD CPHYMRTGTC KYETNCKFNH  960
PDPTAAGESR PQSTYGNGRP APLQDLPKSQ GINSETTEWN GYQAPAYLPH RSKPAPPPPP  1020
YVMNNSVTEM NYYGQYAQQK QAEEFPQRPG QPVCFYFAQT GDCINKSNCQ YHHPKNHTPA  1080
TPSCTLNDRG LPLRPGEREC PYHMRNGSCK YASNCRSNHP DPTATGGSDP PSGYGNGGPS  1140
SLQGASQSTV APWPAPRPLN EAPVYSTLMI PPPQVVSSQN SE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036963.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948470.10.0zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLM5WWY51e-126M5WWY5_PRUPE; Uncharacterized protein
STRINGXP_008392972.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2758123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-72C3H family protein