PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr036939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 533aa MW: 59264.5 Da PI: 6.3666 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.5 | 6.6e-115 | 160 | 531 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetsekn..sseelaalklfsevsPilkfsh 95 lv+lL++cAeav+ +d++ a+alL +l+ +a g+++qR+a++f+++La+rla ++ + ++ + s+ts+k+ +++ al+l +e++P ++f+h Pbr036939.1 160 LVQLLTACAEAVACRDKSHASALLYELRANALVFGSSFQRVASCFVQGLANRLALVQPlGAVRFI-GSATSTKDfaLDKKEEALRLVYEICPHIQFGH 256 689***************************************************95551444444.3344434456999999**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 ++aN+ Ilea+ege+ vH++D++++ +G QW L+++La+R+++pp +lRiTgvg ++l+ +ge L+ +A++lg+++ef+v v+++le+ Pbr036939.1 257 FVANSSILEAFEGESFVHVVDLGMTlglpHGDQWRGLIESLATRTGQPPtRLRITGVGL----YGDRLQIIGEELEAYADSLGINLEFSV-VESNLEN 349 *********************99873333667*************88877*********....9*************************9.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 l++e++++ gE+l+Vn++lqlh +++es + +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E Pbr036939.1 350 LRPEDIKMYDGEVLVVNSILQLHCVVKESRGALN---SVLQMLHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKME 444 **************************88877777...8************************************************************ PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF++ p++ + +qak l k+k +gy++ ee+g+lvlgWk++p+v++S+W+ Pbr036939.1 445 QFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQATPFK--MLAQAKQWLGKIKvCEGYTILEEKGCLVLGWKSKPIVAASCWK 531 ******************************************96..678***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.84 | 134 | 512 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-112 | 160 | 531 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MAPSRNFLPE EYMINHERTN KMSVLDLSTH SAASAMTCYP YLHTPLLEEG GTPSTPPYSD 60 ESGNHKRLKW TTSISDSMSS HNSLYSGGGS GDSCITDISL SRRSSTNSLN TLPRLHFRDH 120 IWTYTQRYLA AEAVEEAVTV MSNAEGNGKE EDGTADGMRL VQLLTACAEA VACRDKSHAS 180 ALLYELRANA LVFGSSFQRV ASCFVQGLAN RLALVQPLGA VRFIGSATST KDFALDKKEE 240 ALRLVYEICP HIQFGHFVAN SSILEAFEGE SFVHVVDLGM TLGLPHGDQW RGLIESLATR 300 TGQPPTRLRI TGVGLYGDRL QIIGEELEAY ADSLGINLEF SVVESNLENL RPEDIKMYDG 360 EVLVVNSILQ LHCVVKESRG ALNSVLQMLH ELSPKILVLV EQDSSHNGPF FLGRFMEALH 420 YYSAIFDSLD AMLPKYDTRR AKMEQFYFAE EIKNIISCEG PARVERHERV DQWRRRMSRA 480 GFQATPFKML AQAKQWLGKI KVCEGYTILE EKGCLVLGWK SKPIVAASCW KC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-63 | 149 | 530 | 8 | 378 | Protein SCARECROW |
5b3h_A | 7e-63 | 149 | 530 | 7 | 377 | Protein SCARECROW |
5b3h_D | 7e-63 | 149 | 530 | 7 | 377 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr036939.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009359535.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A192ADG0 | 0.0 | A0A192ADG0_PYRPY; DELLA protein RGL2 | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-80 | RGA-like 1 |