PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036874.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 433aa    MW: 47339.9 Da    PI: 8.2519
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036874.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP95.54.8e-3096154260
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS-- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekr 60 
                  C v+gC++dls++++yhrrhkvCe hsk+p+v+++g +qrfCqqCsrfh+l+efDe+k 
  Pbr036874.1  96 CLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTINGNKQRFCQQCSRFHALEEFDEGKX 154
                  ********************************************************995 PP
2SBP24.66.6e-081721925878
                  S--S-STTTT-------S--- CS
          SBP  58 ekrsCrrrLakhnerrrkkqa 78 
                  +krsCr+rL++hn+rrrk+q+
  Pbr036874.1 172 GKRSCRKRLDGHNRRRRKPQP 192
                  79****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-3190153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.73593190IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-2894154IPR004333Transcription factor, SBP-box
PfamPF031101.7E-2696189IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.12E-5171195IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDWNLKAASW DLSELEQETF SNLDTTVDGS SSFGDHRTFK GSSFSVDLKL GQLGGSGNNE  60
LVDMLKEPVP RTTSSFSSGP SKRSRVAYSG SQMVSCLVDG CNSDLSTCRD YHRRHKVCEL  120
HSKTPQVTIN GNKQRFCQQC SRFHALEEFD EGKXXXXXXX XXXXXXXXXX XGKRSCRKRL  180
DGHNRRRRKP QPEPLSHPGS FMSSYQGTPR LLPLSSSLVY PSTNIVNPTW AGIVKTEPDS  240
GIHNHQLPMI DKQNMFLGSS DSTSSSGYKG GKQFSLFQSS DSSPVHHNHQ TSHHHSASVC  300
RPLLNTISFS ETGGGGGGGT TKSKTFCDRL TTQTHDSDCA LSLLSSPQTQ QRSEIGLRHM  360
VQQPNSISLM QQRFGPAGLH GNSSSIEPMD SVLVSNGSGD ANVHCPGMFH IGSDGSHGSG  420
NQHPQTPPFH WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-23961891184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172189KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036874.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359410.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_009359411.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A2R4QL790.0A0A2R4QL79_9ROSA; SPL domain class transcription factor 2
TrEMBLD9ZJC10.0D9ZJC1_MALDO; SPL domain class transcription factor
STRINGXP_009359410.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-56SBP family protein