PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036647.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 373aa    MW: 40048.1 Da    PI: 8.6207
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036647.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.53.5e-3981141262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nkks+
  Pbr036647.1  81 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKKSK 141
                  67899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3365134IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3284139IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4685139IPR003851Zinc finger, Dof-type
PROSITE patternPS01361087123IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVFSSIPVYL DPPNWHQQPN HHPLGSATTG SENLHELPPL PPPPSLTHVG GAANIGGGGG  60
PGSIRPSSMS DRARLANIPQ PETALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT  120
RGGSLRNVPV GGGCRRNKKS KSNNSSNSSR SKSPVATGDH IQTGSNSITN NSSDHMIGNI  180
THHFSNLPPS THQSLPFLAS SIQSLGRYGG AGNMGLNFNE IQQEETDHHH HHMGFQFHQI  240
AGGNNMNNLS GGILGGGHNN QWRNLNLQHI PFLGGTGFES STSTGLYPFQ TGDQGVDHQA  300
STHPMVGNNS RISTEQLPPP VKTEDNHGPS LMRPSLGTAI SPEINNSQFW GGNLNAWTDL  360
SGPNSSSTSH LL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343830.10.0PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBLA0A498KF850.0A0A498KF85_MALDO; Uncharacterized protein
STRINGXP_009343830.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.28e-42OBF-binding protein 3