PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036624.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 462aa    MW: 51837.6 Da    PI: 5.1491
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036624.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.54.6e-31244299155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsek.AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k r+rWt+eLHe+Fveav++LGGse+ AtPk i++lmkv+gLt++hvkSHLQkYR+
  Pbr036624.1 244 KSRMRWTQELHEAFVEAVNHLGGSERgATPKGIVNLMKVEGLTIYHVKSHLQKYRT 299
                  68**********************9879***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819956.8E-5193242No hitNo description
PROSITE profilePS5129411.071241302IPR017930Myb domain
SuperFamilySSF466891.31E-16242299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28243301IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-23244299IPR006447Myb domain, plants
PfamPF002491.2E-8246298IPR001005SANT/Myb domain
PfamPF143795.7E-20330376IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSEFGASKAM SSSFPRLHTP LDDKYSNLPD SFQVSSQREN CIYSMQLQAS FPGNLFPSAS  60
RPNEIHISSV PPCEQRSQNS PFICKSPVDG KSLSLHRSSH SPHLEVQPTA LINYPEENKD  120
ISWCPDSLQD FLHFSESVPD QNGLVDSSAG VITSEEHAGK TNWSDWDPLI SFDDALDPNW  180
ELPVDVDRMD PKAKQPEIQQ HPPQMQQHQL QIQQYQPQIQ QHQSVQAVDF RPSPEPLSSA  240
PPTKSRMRWT QELHEAFVEA VNHLGGSERG ATPKGIVNLM KVEGLTIYHV KSHLQKYRTA  300
RYKPESLEVP CEKVSTQVEE TNPLDVKGSM GITEALRLQV ELQKRLHEQL ENQRKLQLKI  360
EEQGKYLEKM FEQQRKIEDN RVKSGSSTLD DHPTPLSDIP CPSTGGDKQE TSTHQHDKTV  420
ITIPLEDGSQ DASREAQEPE CPEDPDGIES GAPPTKRARN G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-28244303260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343775.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
TrEMBLA0A498K4N50.0A0A498K4N5_MALDO; Uncharacterized protein
STRINGXP_009343775.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.27e-84G2-like family protein