PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr036605.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 513aa MW: 56543.4 Da PI: 7.2547

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr036605.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	236	275	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le +L++ + Pbr036605.1 236 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQ 275 6889*************************86666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-8	232	279	No hit	No description
SMART	SM00338	5.2E-6	233	300	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	235	279	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	236	276	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.91E-7	237	279	No hit	No description
PROSITE pattern	PS00036	0	240	255	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.3E-28	318	392	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MAFISSATCP DSSFFLEYKD ENGLRKSCMA ASHQVGDATA TATTAGLSSE SGPSNHHIPY 60 AVLHGMNVPS TSFLNQEGSA FNFGELEEAI ARQVRNDEAQ APLFTAGGEG AGRPAATLEM 120 FPAWPMRFHQ TSRGSSKSGG EESTDSESQV NTLTTTTTNQ LELEPESPMS KNPSSSQAAF 180 DQKHLHFQQQ QQQLQQKLAI SDTSRGPNSQ TQSAPKPSQE KRKGAGSTSE NKQLDAKTLR 240 RLAQNREAAR KSRLRKKAYV QQLESSRIKL TQLEQELHRA RAQGLFLAGA GGGLGNISSG 300 AAIFDMEYAR WLEDDHRHMS EFRTGLQAHL SDRDLLLSVD GYISHYDELF QLKGVAAKSD 360 VFHLITGIWT TPAERCFLWM GGFRPSELIK MLIGQLDPLT EQQFMGIYNL QQSSQQAEEA 420 LTQGLEQLHQ SLVNTIAGGP VIDGMQQMAV ALGKLTNLEG FVRQADNLRQ QTLHQLRRIL 480 TIRQAARCFL VIGEYYGRLR ALSSLWASRP RE*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MAFISSATCP DSSFFLEYKD ENGLRKSCMA ASHQVGDATA TATTAGLSSE SGPSNHHIPY  60
AVLHGMNVPS TSFLNQEGSA FNFGELEEAI ARQVRNDEAQ APLFTAGGEG AGRPAATLEM  120
FPAWPMRFHQ TSRGSSKSGG EESTDSESQV NTLTTTTTNQ LELEPESPMS KNPSSSQAAF  180
DQKHLHFQQQ QQQLQQKLAI SDTSRGPNSQ TQSAPKPSQE KRKGAGSTSE NKQLDAKTLR  240
RLAQNREAAR KSRLRKKAYV QQLESSRIKL TQLEQELHRA RAQGLFLAGA GGGLGNISSG  300
AAIFDMEYAR WLEDDHRHMS EFRTGLQAHL SDRDLLLSVD GYISHYDELF QLKGVAAKSD  360
VFHLITGIWT TPAERCFLWM GGFRPSELIK MLIGQLDPLT EQQFMGIYNL QQSSQQAEEA  420
LTQGLEQLHQ SLVNTIAGGP VIDGMQQMAV ALGKLTNLEG FVRQADNLRQ QTLHQLRRIL  480
TIRQAARCFL VIGEYYGRLR ALSSLWASRP RE*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr036605.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC770002	0.0	KC770002.1 Pyrus pyrifolia microsatellite TXY004 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343743.1	0.0	PREDICTED: transcription factor TGA2.2-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A498IN11	0.0	A0A498IN11_MALDO; Uncharacterized protein
STRING	XP_009343743.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]