PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036423.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 537aa    MW: 59361.4 Da    PI: 6.4474
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036423.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.8e-084865241854
                  HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Pbr036423.1 486 MFQNflHPYPKDSEKHVLAVKSGLTRNQVSNWFINARVR 524
                  5787779******************************88 PP
2BELL73.53.3e-24361429271
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                  +qe+++kk+kLl ll+ +d+ Y+q+ ++++tv+s+F+a+++ ++ ++++++Al+++S  +++L+++i+ +
  Pbr036423.1 361 KQEIKAKKTKLLALLQTLDDCYNQCADEIHTVVSAFHAATETDP-HIHARFALQTVSVLYKSLRERISTH 429
                  589*****************************************.**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-25294428IPR006563POX domain
PfamPF075269.6E-26300427IPR006563POX domain
PROSITE profilePS5007111.013465528IPR001356Homeobox domain
SMARTSM003893.5E-5468532IPR001356Homeobox domain
CDDcd000863.34E-10468529No hitNo description
SuperFamilySSF466892.88E-14470532IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-24471532IPR009057Homeodomain-like
PfamPF059201.6E-14485524IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MMDNEMYNCP ADGRSSLVTD GVVPHTTMNS LIQSYSFDLD HQNRMMALIP VLSTFHGEPV  60
MDSDSDLTAA NGVSVAETNP FLTSQRRNNV GDSSFVSSSF TDSTVFQATP QSSASLAALF  120
AARDSSLQEN LNNLAISAMP NNSSEVYVSN DCSNNSNSPF ASSVNCGYDE MLGSINRQWE  180
INKYAALSEL GERSSVRTGL QPCSSVGNVD PNGWLSSDGA SVMTYNSYSS AKFSNELALT  240
LAMSRPLDIG NQYPDVGSSG IAQPCLNQTR FASPERNSSN SEKPSLSYSS CKPPQLSQII  300
CGSRYLHVVQ EILSDIANYS LENLDQSSFS SVRLVSERGM SVMDDGLDGR FEVPKEPAVR  360
KQEIKAKKTK LLALLQTLDD CYNQCADEIH TVVSAFHAAT ETDPHIHARF ALQTVSVLYK  420
SLRERISTHF LSISENSSPA SPSESERSFE IQKQLALQHL KKKEHQIWRP QRGLPERSVS  480
VLRAWMFQNF LHPYPKDSEK HVLAVKSGLT RNQVSNWFIN ARVRLWKPMI DKCTRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15474535566Homeobox protein Meis2
3k2a_B1e-15474535566Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036423.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359028.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487316e-85ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A498JBY40.0A0A498JBY4_MALDO; Uncharacterized protein
STRINGXP_009359028.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-69homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]