PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036348.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 663aa    MW: 74200 Da    PI: 6.9156
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036348.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.5e-2961144186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++  t+++fdql+
  Pbr036348.1  61 RWPRQETLALLQIRSDMDVAFRDASVKGPLWEEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLN 144
                  8********************************************************************975544..6******97 PP
2trihelix100.81.1e-31458542186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+k ev+aLi++r++++++++++  k+plWee+s +mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+
  Pbr036348.1 458 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFNLLD 542
                  8*********************************************************************8.99********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-458120IPR001005SANT/Myb domain
PfamPF138376.9E-1960145No hitNo description
PROSITE profilePS500906.87660118IPR017877Myb-like domain
CDDcd122039.27E-2360125No hitNo description
SMARTSM007170.0029455517IPR001005SANT/Myb domain
CDDcd122036.01E-28457522No hitNo description
PROSITE profilePS500907.05457515IPR017877Myb-like domain
PfamPF138374.6E-22457544No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MLGDSTSVLG SSTSRDAAAV AVAAPEGGGG DGSNNNSGEE TFRGGHEELS GGGERSFGGN  60
RWPRQETLAL LQIRSDMDVA FRDASVKGPL WEEVSRKLAA LGYHRSAKKC KEKFENVYKY  120
HRRTKEGRTG KSEGKTYRFF DQLNAFENQP PTPGSTSTTH HHQRKPHQPM AAAAATVTTT  180
AMANPPTIFH PNSSTTTTST TVPSSATPHP TITTVSSQGI ATPTLNNLTL PSSFPQTNPI  240
VLPPPPQPRP HQPTTANPTT NANQHQQQQH TGFPTSLSAI PTDIISNSTS SSTSSDEELE  300
GRAKKKRKWK EFFERLMKDV IQKQEDLQKR FLETIEKREQ ERMVREEAWR MQEMTRINRE  360
REILAQERSI TAAKDAALMS FLQRVSEQQQ NQNQHQSMPN QSQLLRLQPA PLPPPPRKPA  420
PPPPQAQPQQ TAMNIDIVPK SNNNGENDNL MMPPSSSRWP KVEVQALIKL RTSLDSKYQE  480
NGPKGPLWEE ISGAMRKLGY NRNAKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFNL  540
LDSLYRERNK FDQNNVNSTS TNNSSSQFKP ENSVPLMVRP EQQWPPQPPS PQQQDHQGLM  600
MGIDHHQNQG DDHHDQQDKE NNIGDDEEEE EDGEEEEDYD EGDGNYEIVA NKPAPVGAAT  660
AE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3976461e-136JQ397646.1 Malus zumi GTL mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343632.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A498IQS20.0A0A498IQS2_MALDO; Uncharacterized protein
STRINGXP_009343632.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-86Trihelix family protein