PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035906.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 619aa    MW: 68597.4 Da    PI: 7.1875
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035906.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094124491954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Pbr035906.1 412 FEHflHPYPTDSDKLMLAKQTGLSRSQVSNWFINARVR 449
                  554459******************************88 PP
2BELL105.53.6e-34282349572
         BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +kk++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai++q+
  Pbr035906.1 282 STRKKSRLISMLDEVYRRYKQYCQQMQAVARSFEYVAGLGNATPYANLAIKAMARHFKCLKNAITDQL 349
                  578**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-52215347IPR006563POX domain
PfamPF075264.0E-39220346IPR006563POX domain
PROSITE profilePS5007112.179390453IPR001356Homeobox domain
CDDcd000862.83E-13393454No hitNo description
SMARTSM003891.1E-10393457IPR001356Homeobox domain
SuperFamilySSF466895.56E-17395460IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-28396457IPR009057Homeodomain-like
PfamPF059201.1E-18410449IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VLAGQAHPVC LQPGSPSPPP SHLHHALLPL SYDPTTSFIS  60
SSSDLLMCAE PAVKEEGSHH HVINHLMGFA SNSTSSSTFR HNNHHPYMDP QFPLTLTAVQ  120
EINANPFLCP PQNVHPLRDF DHQQPPYDDQ VVVFKPEPLS LSLSSSQPTN HTHHTQQTQN  180
NTNNNSLQRF SSPGINYDSI NSGVSVASVP FGPFTGYASI LKGSRFLKPA QQLLEEFCDV  240
SSREIYSAKV LTAEDSSSFL DPPIESFGDD DSLTAGGDGG QSTRKKSRLI SMLDEVYRRY  300
KQYCQQMQAV ARSFEYVAGL GNATPYANLA IKAMARHFKC LKNAITDQLH SRNRNGSHLG  360
HEKDESPMLH SSRSVYGQRS IHTSDFVDHQ PVWRPQRGLP ERAVTVLRAW LFEHFLHPYP  420
TDSDKLMLAK QTGLSRSQVS NWFINARVRL WKPMVEEIHM LETRQAQKAS QRVDLSSNRS  480
SDDHLPSPNS LGSENPSTST HRVQDTASKR TRSELHDHIT MGATEQSLSY SNFPSHMHVG  540
HVGMNMAGGS SSGVSLTLGL HQNNGIGFSA PFPINAAERF GLGLDGNSEN YAMVGFEAQN  600
RHYGRDVMGG QLLHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16399457563Homeobox protein Meis2
3k2a_B8e-16399457563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358787.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-111BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A498IE990.0A0A498IE99_MALDO; Uncharacterized protein
STRINGXP_009358787.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.16e-97TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]