PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035851.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 378aa    MW: 40373.6 Da    PI: 9.4285
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035851.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.81.5e-4379156178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegCe+dls ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q+
  Pbr035851.1  79 RCQVEGCEVDLSGAKAYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPQP 156
                  6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.0E-3673141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.39477154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.24E-4178159IPR004333Transcription factor, SBP-box
PfamPF031109.8E-3380153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDMGSSSMTE SGSSSSSSPP NSSAESLNGL KFGRKIYFED GGCGALHKSS SGSAAGSSSA  60
GATPPKKQRG GGNLGQPPRC QVEGCEVDLS GAKAYYSRHK VCGLHSKTPT VIVAGLEQRF  120
CQQCSRFHLL PEFDQGKRSC RRRLAGHNER RRKPQPGSIL SARGRLSSSL YENSNRVGSF  180
LMDFTAYPRL SGRDEWTTTR TSERAPVNQN ANDAGKFLQQ PWQSNSEIST SGFYLQAGGT  240
SYPGPGIPPG ECVTVVTDSS CALSLLSNQP WGSRNRVSGA GMNSLMNTQG VPVAQTVPHS  300
ATSNHFPTTS WGFKGNENGS SSHGMLPDLG LGQISQPLSS QYSGVLELSQ QGRRQQHMEL  360
GHTRGYDSTS QQMHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-31801531184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738550.0KF673855.1 Malus domestica cultivar Fuji SBP-box transcription factor (SPL33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369782.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLD9ZJC00.0D9ZJC0_MALDO; SPL domain class transcription factor
STRINGXP_009369782.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-65squamosa promoter binding protein-like 9