PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035722.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 300aa    MW: 32456.2 Da    PI: 9.7492
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035722.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.31.4e-29132187258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh+hA+rRpRg+gGrF
  Pbr035722.1 132 GPIYVNAKQYNGIMRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 187
                  69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-32129190IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.402130190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22133155IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-26133187IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22164187IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAMQTVYFKG HEGIAPNPIG QFSSSLSGPW WSSLGSQPVY GESCGLSKPS TKEQPNTGDH  60
FTATKLAGRG TEQGLEKGNT NQFTIFPGDG QKSQAAISLQ SSPGKYHGHF ELGFSQPVGR  120
IMLPLNLTED EGPIYVNAKQ YNGIMRRRQS RAKAVIENRA ARLRKPYMHE SRHRHAMRRP  180
RGCGGRFLNT KTMNNGDKGT EGKQVGDGQL FRLSGSQSSE VLQSDSGTLN SSRETNGSIS  240
NISGSEVTST YSRGDLDCFS INHPGPSLHS LSDMRDSARG MVIPTKWVAA GDNCCNLNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-16131191262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171180RHRHAMRRPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035722.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343259.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
RefseqXP_009343260.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
RefseqXP_009362678.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A498ICE40.0A0A498ICE4_MALDO; Uncharacterized protein
STRINGXP_009343259.10.0(Pyrus x bretschneideri)
STRINGXP_009343260.10.0(Pyrus x bretschneideri)
STRINGXP_009362678.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.26e-51nuclear factor Y, subunit A10