PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035714.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 317aa MW: 34973.2 Da PI: 7.0269

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035714.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.1	5.3e-35	16	72	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC +ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGggrr+n++ Pbr035714.1 16 SPNCPRCGCSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGRRRNRRG 72 568***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.969	17	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-29	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-18	19	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MERAGWKPND DHHHTSPNCP RCGCSNTKFC YYNNYSLTQP RYFCKGCRRY WTKGGSLRNV 60 PVGGGRRRNR RGSKSLRLSA TTTSTTEGHA HHNTNKSRAS TNEGAHNSYG TNVLGDSTSP 120 SVTQDGSHID LALVYANFLK QKPDNSDSTT GSDHQLPKFP SEFDPAALDF SSMELNMNNA 180 SSDNTSTQLM DNHYHQNGLV GSLGFHTLSH DHLSTENCST NDRMYFGGLD PLIHHPEKHH 240 HQHTSEVVQY ASDFGLPPLP GQEALWSTTS QMMDSGSHTM QAGTSILGHE LHNPNLLMDG 300 WSPLDLPCNE AFSRST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	70	RNVPVGGGRRRNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035714.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343266.1	0.0	PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBL	A0A498ID58	0.0	A0A498ID58_MALDO; Uncharacterized protein
STRING	XP_009343266.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-31	Dof family protein