PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr035636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 250aa MW: 26825 Da PI: 10.4358 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.2 | 6.9e-39 | 31 | 153 | 2 | 98 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg......... 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tg+++ +as+ aess+s+++ +s + Pbr035636.1 31 APKRSSTKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIVAATGSGTMPASALaaAAESSVSEQG-NSVSsglmsfghl 127 789******************************************************************888844444444444.3333467777777 PP TCP 89 ................kaaksaaksk 98 +++ ++++++ Pbr035636.1 128 grsnaatgiwpfvsgiRSSFDHNSGQ 153 77666666666666554444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.3E-32 | 36 | 149 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.032 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAENNKAPAQ IKDLQIMIAN KEKDESKKQL APKRSSTKDR HKKVDGRGRR IRMPALCAAR 60 VFQLTRELGH KSDGETIQWL LQQAEPSIVA ATGSGTMPAS ALAAAAESSV SEQGNSVSSG 120 LMSFGHLGRS NAATGIWPFV SGIRSSFDHN SGQQTLNFGG ENLNFMHKFG FQGFDAPSNL 180 GSMSFPTTLS GSNQQVPGLE LGLSQDGHIG LVNSQALSLT QFLQNKVQRP RGVGSFNQQQ 240 QQQQSNTNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr035636.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009343128.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-67 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M5XSE7 | 1e-113 | M5XSE7_PRUPE; Uncharacterized protein | ||||
STRING | XP_009343128.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-64 | TCP family protein |