PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035575.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 194aa MW: 22004.1 Da PI: 9.8645

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035575.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7e-27	28	117	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++ k e+++r++ r gCka++ vk+ek+gkw+vt+++++HnH+l+ Pbr035575.1 28 KFYTDYARQVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQPGKFGPEKKPRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 117 6*****************************************9999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-25	28	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MDVGTSGGGL VPEPYVGMEF DSEDAARKFY TDYARQVGFV VRVMQRRRSG IDGRTLARRL 60 GCNKQGFSPN QPGKFGPEKK PRPSAREGCK ATILVKMEKS GKWVVTRFVK DHNHPLVVTA 120 NGFSTEGDKD RKIEELTMEL EHQDQRCAAY REKLLRFMHN VEAETEELSG KIQAIVENVR 180 KVESEMQKHS FRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035575.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358953.1	1e-143	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Swissprot	Q9SZL8	1e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A498JRX5	1e-137	A0A498JRX5_MALDO; Uncharacterized protein
STRING	XP_009358953.1	1e-143	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-74	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]