PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr035125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | SBP | ||||||||
Protein Properties | Length: 234aa MW: 25975.1 Da PI: 6.8487 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 94.9 | 7.9e-30 | 138 | 203 | 1 | 66 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 +C+++gC++dls+ak y+rrh vCe h kap v+vsg+++rfC +Csrfh+lsefD++k+sCrr++ Pbr035125.1 138 ICKADGCAVDLSDAKAYNRRHWVCELHWKAPLVIVSGQKRRFCHKCSRFHDLSEFDDTKQSCRRHF 203 5**************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-29 | 132 | 200 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 23.658 | 136 | 213 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.46E-29 | 137 | 205 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-24 | 139 | 202 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAKSAVGLNA LSVEGTRDVT ETLYPEANIK VGWRKVEESR VAQSKTEHPS HAVGLDAMNM 60 QVGARTMEET SVSDVEAGHK RIQGKEVSKL DVPFRVLGKD VLKDEEDEEL DEQVEDHHDR 120 KKKGAESATG ASGDGMPICK ADGCAVDLSD AKAYNRRHWV CELHWKAPLV IVSGQKRRFC 180 HKCSRFHDLS EFDDTKQSCR RHFPYTERDG TGTQLKDVSG DINRVLKKST PSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-23 | 130 | 204 | 1 | 76 | squamosa promoter binding protein-like 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr035125.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959575.1 | 1e-135 | uncharacterized protein LOC103437407 | ||||
TrEMBL | A0A498JPL6 | 1e-122 | A0A498JPL6_MALDO; Uncharacterized protein | ||||
STRING | XP_009358732.1 | 1e-171 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38325 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 9e-27 | squamosa promoter binding protein-like 5 |