PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035121.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 1119aa    MW: 124784 Da    PI: 5.4687
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035121.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP96.81.9e-30493558166
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 
                  +C+++gC++dls+ak y+rrh+vCe hskap v+vsgl++rfC +Csrfh+lsefD++k+sCrr++
  Pbr035121.1 493 ICKADGCAVDLSDAKAYNRRHRVCELHSKAPLVIVSGLKRRFCHKCSRFHDLSEFDDTKQSCRRHF 558
                  5**************************************************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056592.0E-164141IPR008808Powdery mildew resistance protein, RPW8 domain
PROSITE profilePS5115314.284193343IPR008808Powdery mildew resistance protein, RPW8 domain
PfamPF056595.5E-26199328IPR008808Powdery mildew resistance protein, RPW8 domain
Gene3DG3DSA:4.10.1100.104.6E-29488555IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.444491568IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-29492559IPR004333Transcription factor, SBP-box
PfamPF031101.9E-23494557IPR004333Transcription factor, SBP-box
SuperFamilySSF525401.05E-24666832IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000091.34E-4677823No hitNo description
PfamPF009314.4E-11686813IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3009.7E-9691815IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF550088.77E-5946995IPR006121Heavy metal-associated domain, HMA
PfamPF004038.5E-6947993IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1001.8E-5948993No hitNo description
PfamPF034655.9E-510781114IPR005142eRF1 domain 3
Gene3DG3DSA:3.30.1330.304.1E-810791114IPR02906450S ribosomal protein L30e-like
SuperFamilySSF553151.82E-510791113IPR02906450S ribosomal protein L30e-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030001Biological Processmetal ion transport
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MALSLVGGAA IGALFGALYD VVKISIGKTA MQYKPLLRDL KFTLDSLRPR IIQQIGEHNV  60
ELGISNEDIE SLQRQMVEGT ELVRMLSNRG TWSCYILCSC CNCNKPSYAE QLVELDRSLR  120
ILLEILKLQE ARDVKEVLLL ARKINDKQGE LERRMADLLK GQQESGDGGE SSGSGAETTP  180
NEQNGENGGQ QVAPSGGGVG AAALGAAFRV LFDTVMQVKD KTTVLKRPLG DLKSTLDSVK  240
PLIEEVAECS KVLNLPNEEL EDVRIQMEKG AELVSNCSKI RRWTTYKMYE YTNKLLGLDG  300
SLQRLLTVLR GQLARDVRES LVSVSNIEAV INQIEGSGVV KLQNEAKGSC ETPAAMAKSV  360
VGLNALSVEG TRDVTETLDP EVNIKVGWQK VEESWVAQSK TEHPSRTVGQ DAMNMQVGAR  420
SMEEISVSDV ELGLKRIQPK EVSKLDAPFR VLGKDVLKDE EDEELDEQVE DHHDRKKKGA  480
ESVTGASGDG MVICKADGCA VDLSDAKAYN RRHRVCELHS KAPLVIVSGL KRRFCHKCSR  540
FHDLSEFDDT KQSCRRHFPY LEHHGTATQL KDLSGDIDRV ISQTERSGAV QSQNDQSEIK  600
GSYEVVEATP PAVGLNVPSV QGTRYSKETL QTSVCREQGI HTELGLKQIQ GKDVFDSEPP  660
YAEYKETEYV PPSVTTGMDV LLRGLKRFLL NDEVSAVVLT GPGGSGKTTL AKFFCEDEEV  720
KNIFKNNIFF VHVSENPNLS IMVQTLYQQM GFQIPALQDE SIALHWLHQF LMKTALHPSM  780
LVLDDVWPGS ESLLDKFDEF KTPNYKIMVT SRYEFPAFGF PYYLKPLNAE DEMTPSHHSL  840
AHNIELLDDD DLICVSPPSI TFDDEGPITH FPDSSASYFG DGSSHVSTAI RPMDQFHDSS  900
ASTLRDKSSY VPKDAGTMFE PDNPVKSTQT YMQQKLELKV SASDKAMKKV MKAVHAIKGV  960
HSTSWDAKNQ RLTVTGQLDP ALIATRLRKI AAKTEVISVG PAKEEIKEDK KEKFLTKTEI  1020
KDDKKARNLT MKERMEDKNQ EKKERSLTLK EKMEYEKREE EERFITPRST TCQEDTLKRL  1080
TMGVDDTQKA LEMGAINRLI VRENLDSNRY VLKELEDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-24485558175squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035121.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358687.20.0PREDICTED: uncharacterized protein LOC103949296 isoform X1
TrEMBLA0A498JPL60.0A0A498JPL6_MALDO; Uncharacterized protein
STRINGXP_008356552.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1508325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-25squamosa promoter binding protein-like 5