PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr035111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 315aa MW: 34384.9 Da PI: 9.5634 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.1 | 9.5e-39 | 40 | 101 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr +PvGgg+rknk+sss Pbr035111.1 40 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRSIPVGGGSRKNKRSSS 101 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-28 | 26 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-33 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.91 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDTAQWPQGI VVKPIEEIVT NSCPKPAAAN NLERKARPQK EQALNCPRCN STNTKFCYYN 60 NYSLTQPRYF CKSCRRYWTE GGSLRSIPVG GGSRKNKRSS SSNNSPSTTS NNSSSSSASK 120 RLPDLIHQNP KINQAQDLNL TFPSTNQDFR NIISGHLLNH HHQQLPNNNI NDQSTNKQQN 180 HISTSSPTST TTTTTTSHLS ALELLTGLTS RGLNSFMPMP VLSDPNNNNS VYNSPSGLIN 240 PMQDFKPTLN FSLDGLGSGY GSLQGHHVQQ SSGRLLFPFE DLKQAPSGGG INEQNKQHGD 300 STGYWTGMLG GGSW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr035111.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009358664.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A498JLQ7 | 0.0 | A0A498JLQ7_MALDO; Uncharacterized protein | ||||
STRING | XP_009358664.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 6e-49 | Dof family protein |