PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034624.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 317aa    MW: 35509.8 Da    PI: 4.6869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034624.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.9e-17241051094
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +  +  l +p++f+++++++  e + ltl+d+   sW+vk+  r + g++ +t+GW+eF ++n L  g fvvF +dgr++f+ +v
  Pbr034624.1  24 N--TEYLHIPRDFLKHIQEDLSERTFLTLTDSLDCSWSVKV-SRTTTGAVRFTDGWQEFLRDNSLGHGNFVVFIYDGRMKFSIRV 105
                  3..34599******888666667778***************.4666677*****************************9996555 PP
2B351.81.4e-162313121298
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +s+++++p  f ++h +k ++++++ +++ + ++W v++ + ++s  + +++GW++F+++n++  gD+++F+l +  + e++v+++ 
  Pbr034624.1 231 TSSNVYVPAAFSRKHFSK-QKQFEIFMKNAEEETWAVNVVHLNTS--HSFSAGWSRFASSNQIGIGDTCIFELLS--SNEMKVRIIH 312
                  456799*********655.4779****************777777..669**********************875..5667888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-209111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-219111IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-1713106No hitNo description
PROSITE profilePS5086312.99913109IPR003340B3 DNA binding domain
SMARTSM010197.8E-1215109IPR003340B3 DNA binding domain
PfamPF023622.5E-1324105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19217312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-17218312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323220314IPR003340B3 DNA binding domain
CDDcd100171.97E-13223311No hitNo description
SMARTSM010191.9E-13225314IPR003340B3 DNA binding domain
PfamPF023621.9E-14231312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVKNISTNDE KKPSFFRILV AGYNTEYLHI PRDFLKHIQE DLSERTFLTL TDSLDCSWSV  60
KVSRTTTGAV RFTDGWQEFL RDNSLGHGNF VVFIYDGRMK FSIRVYGTNA CEREVGSTKI  120
GSTNQNSTFA DTTKMPSGSG GQRKCDGSSS KRPHPSSSCS NDDSGFETTG ENLCEPEEDD  180
EDSTSNDWDN DEDNTSDEDS EDDTSEEDME AAAEPESFKS KFPHFKSVIR TSSNVYVPAA  240
FSRKHFSKQK QFEIFMKNAE EETWAVNVVH LNTSHSFSAG WSRFASSNQI GIGDTCIFEL  300
LSSNEMKVRI IHKASV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034624.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342412.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A498J0K30.0A0A498J0K3_MALDO; Uncharacterized protein
STRINGXP_009342412.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-17B3 family protein