PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034589.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 399aa    MW: 45364.4 Da    PI: 4.4422
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034589.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.5e-15164248286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +L++a  ++  + ++++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+++   + + +++s+++yf++++
  Pbr034589.1 164 WTERETFVLLDAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERAKFAE-SGGATSKWVYFTKMD 248
                  *************************************762678***********************9998.578889********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-21163249No hitNo description
PROSITE profilePS500906.319164221IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-4164228IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDDTEDDTRY PPNLYGGNHQ QGYGSSQRQK LPARGGVPYP RPVGNDYADD EEEDETDDDE  60
ELGEEEEDNN GQNGYPSVHK GVGDDDHEDD SYDEEDEDDE EDNKMMVRRL DDDDLKTHPK  120
KRKLKSLISS YEFAPRLPAP PPPPAAAPSA PRQSIGGRNA LTDWTERETF VLLDAWGDRF  180
LQRGKKSLRS EEWQEVAEKV SEVSKIERTD TQCRNRLDTL KKKYKKERAK FAESGGATSK  240
WVYFTKMDML MSSLQQQAGL SCGLDSGEYV FMNPKVYLNR ANGLDEMRDS PGNSESSEGG  300
DDDSDGLPPK KRRYGRENGD RGSFRLLADS IQKFSDIYEK IEKSKRKQMA ELEKMRMDFH  360
RDLELQKRQI MERAQAEIAK IQQGDDEEND NSAENASG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122LKTHPKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358193.10.0PREDICTED: trihelix transcription factor ASIL1-like
RefseqXP_018503375.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A498HFJ50.0A0A498HFJ5_MALDO; Uncharacterized protein
STRINGXP_009358193.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.19e-71Trihelix family protein