PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034260.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 348aa    MW: 40063.2 Da    PI: 8.8406
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034260.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.4e-104289255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ++kGV   + +g W A+I+       +  r++lg+f +++eAa a++ a+ kl+g
  Pbr034260.1 42 RFKGVVEQP-NGHWGAQIYA------NhERVWLGTFSSENEAAMAYDSAAIKLRG 89
                 799997566.8******999......44*************************97 PP
2B383.22.5e-26169260183
                  EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+ltpsdv+k++rlv+p + a+++         ++++ +s +l+++d+  rsW+++++y+k+s+++v+t+GW++Fvk ++Lk++D+++F 
  Pbr034260.1 169 FQKELTPSDVGKLNRLVIPVTNAKRCfpsiseaisQKVESSSSQLVFYDKMMRSWTFRYCYWKSSRSFVFTRGWSRFVKTHHLKAKDILTFF 260
                  99*******************************9988889999***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.36E-234199No hitNo description
Gene3DG3DSA:3.30.730.107.6E-184297IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-154298IPR016177DNA-binding domain
PfamPF008472.7E-64289IPR001471AP2/ERF domain
SMARTSM003801.8E-2042103IPR001471AP2/ERF domain
PROSITE profilePS5103217.5564297IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-29165265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-25167262IPR015300DNA-binding pseudobarrel domain
CDDcd100179.79E-24168259No hitNo description
PfamPF023623.3E-23169259IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801169284IPR003340B3 DNA binding domain
SMARTSM010192.4E-19169270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEVMSRTIS NVGLKRNVEE VCDPNLAAND SSDGASRHVS KRFKGVVEQP NGHWGAQIYA  60
NHERVWLGTF SSENEAAMAY DSAAIKLRGW ECHRNFPWTK VTFEEPHFQN QYSKEAVLRM  120
IKDGSYQAEF LEYRKSCTAS KSLRSDIQFG SLVRVHSNGN AKMLNRLLFQ KELTPSDVGK  180
LNRLVIPVTN AKRCFPSISE AISQKVESSS SQLVFYDKMM RSWTFRYCYW KSSRSFVFTR  240
GWSRFVKTHH LKAKDILTFF QRQYKQLGDN GNKEPQTFYM VKVNWDGAES EDDNINCLVE  300
NEATNYQYNK CKLESVSQNI NEADGILADQ KKRFRLFGVE ICNEVAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2316825913100DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034260.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951083.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A498HW870.0A0A498HW87_MALDO; Uncharacterized protein
STRINGXP_009358462.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-80RAV family protein