PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033924.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 292aa    MW: 32103.3 Da    PI: 7.7896
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033924.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof129.11.3e-4039100263
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                  +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Pbr033924.1  39 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 100
                  7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.4E-344197IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-274297IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6464397IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104581IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDPSSGQQQQ QEMSAHSMDM LVGSKSQQQQ QDRKPRPQPE QALKCPRCDS TNTKFCYYNN  60
YSLSQPRYFC KSCRRYWTKG GTLRNVPVGG GCRKNKRSSS AAKRAQEQPL TPNSNPLPAL  120
GYDSNDLTLA FARLQRQQSC GGQLGFDDHN ILGNPNSAPG FLDGLRTGFL ESHNGNFQNL  180
YNYGFGNGNG NLGEVEDCGG GMGIHHPFEE ATTTTSTTTA VTVTTMKQEL FNAQSESSNR  240
VLWGFPWQMN GGDHHANMVG NGNHEYDSGR ESWNGIASSW QHGLLHTTPL V*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358258.10.0PREDICTED: dof zinc finger protein DOF2.1-like
SwissprotQ8LE431e-56DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLD9ZIX60.0D9ZIX6_MALDO; DOF domain class transcription factor
STRINGXP_009358258.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-43TARGET OF MONOPTEROS 6