PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033729.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 704aa    MW: 76784 Da    PI: 5.4695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033729.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.24.9e-07273293526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ GtC+ Gd C +aHg
  Pbr033729.1 273 PCPEFRK-GTCRQGDACEYAHG 293
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002043.96E-825167No hitNo description
SuperFamilySSF484032.66E-1225153IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-1529168IPR020683Ankyrin repeat-containing domain
PfamPF127962.6E-773138IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.76173148IPR020683Ankyrin repeat-containing domain
SMARTSM002480.006973103IPR002110Ankyrin repeat
SMARTSM002480.64108140IPR002110Ankyrin repeat
PROSITE profilePS500889.938108143IPR002110Ankyrin repeat
SMARTSM003565.4E-5268294IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4273293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784273295IPR000571Zinc finger, CCCH-type
SMARTSM0035631303326IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944303327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MCSGSKRNPS STDTIMECEK QEGTRYNFSI LLELAACDDL EGFKRAVEEE GLDVDEASYW  60
CGRLIGSKKL GFEERTPLMI AAMFGSMNVL NYILQSCLVD VNKACGSDRA TALHCAVAGG  120
SAASAEVVKL LLAASADASS LDANGNQPGD LIAPAYSSRK KALEVMLKGV PSIDEPFDFS  180
EQMINETEGQ EQQEMTTPRA SKDGTEKKEY PVDLSLPDIK NGIYSTDEFR MYTFKVKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG TCRQGDACEY AHGIFECWLH  300
PAQYRTRLCK DETGCTRRVC FFAHKPEELR PLYASTGSAV PSPRSFSATA ASLDMGSIAP  360
LSLNSPSMMI PPASTPPMTP TGPSSPMSGN MWQNNPNFAP PTLQLPGSRL KSTLSARDMD  420
FEIEMLSLER DRRRQQRLID EISGSPSSWN KVLSPVSPFS ASGNRTGELN TIGGVNPTNL  480
DDIFGSLDPA ILPQFNGLSR DATASQLHSP TGIQMRQNMN LQARPSYSAS LASSPVRASP  540
MFGVDASSAA AVFNSRSAAF AKRSQSFIER SAGNRNSVVS SSADFGTIKP SNLSDWGSPG  600
GKLDWGIQGE ELNKLRKSAS FGFRSNGSSS PTASSMMPTN GDEPDVSWVQ SLVKDGPQAS  660
QQRRQFGFED QQQQQQCHPN NGGPEMLPAW VEQLYFEQEQ MVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338915.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD9ZIV40.0D9ZIV4_MALDO; C3HL domain class transcription factor
STRINGXP_009338915.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein