PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr033642.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 445aa MW: 47913.6 Da PI: 9.6371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr033642.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	211	233	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg++F+ ++ + H + H Pbr033642.1 211 TCHKCGERFTKWDAAEAHHLSkH 233 7*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	212	233	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.48E-21	235	443	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.4E-8	242	441	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MPTVWFSLKK SLHCKSEPSD VHDPRGRKQL STISTRKAGG GRSGCSRSIA NLKDVIHGSK 60 RHMERPPSNC SPRSIGSSEF LNPITHEVIL SNSRCELKIT TSLGGFQDGV GGGNANNGSG 120 GGSLGGGSTF VDTLKPGTPG PGGHPTMHYF NPSFRPSSTP PRKSHFLASA ESTEGSAGFK 180 GSAISGSAGG IRQSNRISFD TENSNGSSAI TCHKCGERFT KWDAAEAHHL SKHAVTELVE 240 GDSSRKIVEI ICRASWLKSE NHCGRIERVL KVHNMQRTLA RFEEYREMVK TKASKLPKKH 300 PRCIADGNEL LRFYGTTVAC CLGLNGSSSL CALEKCSVCR IIRNGFSAKK ELKEGVGVFT 360 TSTSGRAFEA IQILEEDATL RKALIVCRVI AGRVHKPLEN IQEIAGQTGF DSLAGKMGLY 420 SNIEELYLLN PRALLPCFLV ICKP*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MPTVWFSLKK SLHCKSEPSD VHDPRGRKQL STISTRKAGG GRSGCSRSIA NLKDVIHGSK  60
RHMERPPSNC SPRSIGSSEF LNPITHEVIL SNSRCELKIT TSLGGFQDGV GGGNANNGSG  120
GGSLGGGSTF VDTLKPGTPG PGGHPTMHYF NPSFRPSSTP PRKSHFLASA ESTEGSAGFK  180
GSAISGSAGG IRQSNRISFD TENSNGSSAI TCHKCGERFT KWDAAEAHHL SKHAVTELVE  240
GDSSRKIVEI ICRASWLKSE NHCGRIERVL KVHNMQRTLA RFEEYREMVK TKASKLPKKH  300
PRCIADGNEL LRFYGTTVAC CLGLNGSSSL CALEKCSVCR IIRNGFSAKK ELKEGVGVFT  360
TSTSGRAFEA IQILEEDATL RKALIVCRVI AGRVHKPLEN IQEIAGQTGF DSLAGKMGLY  420
SNIEELYLLN PRALLPCFLV ICKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr033642.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358074.1	0.0	PREDICTED: uncharacterized protein LOC103948743
TrEMBL	A0A498IH94	0.0	A0A498IH94_MALDO; Uncharacterized protein
STRING	XP_009358074.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4983	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-132	C2H2 family protein