PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr033535.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 742aa MW: 83306.5 Da PI: 6.0233 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.2 | 8.4e-115 | 368 | 739 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+a ++d++ a++lL+++++++sp gd +qRla++f+++L+arla+++s++yk l +++ts ++ l+a++l+ +sP+ k+s+++ Pbr033535.1 368 LRTLLISCAQAGGADDHRTANELLKKVRQHSSPFGDGTQRLAHCFANGLEARLAGTGSKIYKGLVSKRTS---AADILKAYHLYLAASPFKKMSNFVS 462 6789************************************************************999999...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N +I++ +e+++r+H+iDf+i +G+QWp+L+q ++ R++gpp++RiTg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+++leeL Pbr033535.1 463 NVTIMNLAEKSTRLHVIDFGILYGFQWPTLIQRISWREGGPPKVRITGIEFPQPGfrPAERVEETGRRLAAYAEKFNVPFEYNA-IAKKWETITLEEL 559 ******************************************************9*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vn+ ++ ++lldesvs++s r++vL+l+++++P+++++ + +n++ F++rf eal ++s+lfd+le+ +pre++er+ +E+e++gr Pbr033535.1 560 KIDKDEVLVVNFLYRGKNLLDESVSVDSVRNRVLDLIRRINPDIFIHGVVNGAYNAPFFVTRFREALFHFSSLFDMLETVVPREDQERMLIEKEIFGR 657 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+ nv+aceg er+er et+++W+ r +aGF ++p++ + +k a ++ + + + ++e+s +l++gWk+r+ +++SaW+ Pbr033535.1 658 EALNVIACEGWERVERPETYKQWHVRNLRAGFVQIPFDRELVKAAAKKVSSLYHKDFVIDEDSRWLLQGWKGRTAFALSAWK 739 *********************************************99999999888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.001 | 342 | 719 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-112 | 368 | 739 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MDPRRRGSSD SFNGVQLGNQ PLPILSHPTV VAGSRFDSNT FFDNSYRNFS CPQPGLSANS 60 VSSYSSVSPE DDSAEDCDFS DEVLKYINQM LMEEDMEDKT CMLKESLELQ AAEKSFYEVL 120 GKKYPPSPEL FHRYASQYGE IPAESSSGTW SNYITSSCNS GGYFGDTTSI QSPDGYSSQL 180 QGLQSYRISQ SFNGYELVDS PNSSIYSPDW NTESQSVWQF NKGVEEASRF LPGETNLVVE 240 LEANEMSVHT PKVGAAASYV KVERTDEGEY SSGGSRGKKN LYREDEDVEE KRSSKQAAFS 300 SESPLRSEMF DVVLLCSTGE GQERLESLRE ALQNGMSKSV IQNGQSEVSK GGKGRGKKQS 360 VKKEVVDLRT LLISCAQAGG ADDHRTANEL LKKVRQHSSP FGDGTQRLAH CFANGLEARL 420 AGTGSKIYKG LVSKRTSAAD ILKAYHLYLA ASPFKKMSNF VSNVTIMNLA EKSTRLHVID 480 FGILYGFQWP TLIQRISWRE GGPPKVRITG IEFPQPGFRP AERVEETGRR LAAYAEKFNV 540 PFEYNAIAKK WETITLEELK IDKDEVLVVN FLYRGKNLLD ESVSVDSVRN RVLDLIRRIN 600 PDIFIHGVVN GAYNAPFFVT RFREALFHFS SLFDMLETVV PREDQERMLI EKEIFGREAL 660 NVIACEGWER VERPETYKQW HVRNLRAGFV QIPFDRELVK AAAKKVSSLY HKDFVIDEDS 720 RWLLQGWKGR TAFALSAWKP A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-50 | 351 | 740 | 1 | 379 | Protein SCARECROW |
5b3h_D | 3e-50 | 351 | 740 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr033535.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018499640.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A498IBE6 | 0.0 | A0A498IBE6_MALDO; Uncharacterized protein | ||||
STRING | XP_009341746.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |