PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033524.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 144aa    MW: 16090.4 Da    PI: 4.7268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033524.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-1727116196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+ v t+++v  s ++v+p kf ++    + +s   t+ +  g+ We+++  + +sg+  + ++W+eFv++n+Lk+gD +vF+l + s+++lv++v
  Pbr033524.1  27 FEVVITKANVKPSYQMVIPAKFQQTL---PSCS-IPTVLTFGGKNWEMTY--THGSGQRKFDTNWREFVNDNNLKVGDACVFELLECSSTKLVFRV 116
                  77889999999***********8655...3344.4577899*********..888888889**********************8755777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-1922119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-2022120IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-2025120No hitNo description
PfamPF023622.4E-1527116IPR003340B3 DNA binding domain
PROSITE profilePS5086313.02827122IPR003340B3 DNA binding domain
SMARTSM010192.0E-627122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGDQPTSNSM IELQGDEFWP LSEKPFFEVV ITKANVKPSY QMVIPAKFQQ TLPSCSIPTV  60
LTFGGKNWEM TYTHGSGQRK FDTNWREFVN DNNLKVGDAC VFELLECSST KLVFRVQILR  120
GDIPSELLGK LKGETVDAPI IID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341640.11e-103PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018499603.11e-103PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018499604.11e-103PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018499605.11e-103PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A498KGX48e-95A0A498KGX4_MALDO; Uncharacterized protein
STRINGXP_009341637.11e-95(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-10related to vernalization1 1