PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033235.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 380aa    MW: 42010.6 Da    PI: 7.8987
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033235.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.83.9e-31139196260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve e
  Pbr033235.1 139 NGVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEGE 196
                  579**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-24141196IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.6E-28141193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-30142193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.049143192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.67E-18296365IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-29301366IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-27306362IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDQLSSQEGE IPLTIPVPIP IPINTSFRSG GHGHLIHHHQ QQHPHDPTAA ATARAAVPHN  60
NNKNNHSNFL PPSTVVPQNQ TPHNTNGSNP MPTGLDHSHE EEEEQEEEHH DHFNNANANV  120
VPYKYNTHNN KKQAVVGHNG VRYKECLKNH AAAMGGTATD GCGEFMPSGE EGTIEALNCS  180
ACHCHRNFHR KEVEGEQQQL SSWDHNFHHT INRAAGVGSR KFLLSHERGG GGGGGRHKSL  240
LAPPQYPHQH QMIMSNYNMG MGMIGMVGSI PSDQSDEQED HHHHRHHGGG GGGTVGSRPA  300
VGHVAKKRFR TKFTQEQKEK MLNFAEKVGW KIQKQEDSFV QNFCQEIGVK RRVLKVWMHN  360
NKHNLANKIN PPPPPPPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-223063641775ZF-HD homeobox family protein
1wh7_A1e-223073641875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227235RGGGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341386.10.0PREDICTED: zinc-finger homeodomain protein 3-like
SwissprotO647224e-66ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A498HRQ40.0A0A498HRQ4_MALDO; Uncharacterized protein
STRINGXP_009341386.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.28e-66homeobox protein 31
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]