PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033225.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 1220aa    MW: 140075 Da    PI: 7.6031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033225.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06237256625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+f+++tG C++G rC++ H
  Pbr033225.1 237 CPFHLKTGACRFGQRCSRVH 256
                  ******************99 PP
2zf-CCCH25.32.6e-08335362126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                  +k ++C  ++++   tC++G  C+F+H+
  Pbr033225.1 335 WKVAICGEYMKSRykTCSRGTACNFIHC 362
                  899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.732231259IPR000571Zinc finger, CCCH-type
SMARTSM0035631232258IPR000571Zinc finger, CCCH-type
PRINTSPR018489.1E-12237256IPR009145U2 auxiliary factor small subunit
PRINTSPR018489.1E-12256276IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3305.5E-11284330IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549289.74E-9285333IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003560.03334363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.878334364IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-6335362IPR000571Zinc finger, CCCH-type
PfamPF132342.4E-288691029IPR025696rRNA-processing arch domain
SMARTSM011423.2E-6910551219IPR012961ATP-dependent RNA helicase Ski2, C-terminal
PfamPF081481.7E-4710581214IPR012961ATP-dependent RNA helicase Ski2, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1220 aa     Download sequence    Send to blast
MESALAEAVA KEGEGVGGGI VPRTEPLGAE KGMTNRKEKR KAMKKMKRKQ TRKEMALKER  60
EEHDAILNDP LELAKITMIE QEEAERSERE RKIFEEREKA WMEAMEVKRK KQIEEEEEEE  120
RRRIKALEEE DELRNEQVEN ANDGNEVDEW DYEEGPAEII WQGNEIILKK KRVKIPKKNT  180
DQESRKKDSD RPTSNPLPPQ SEAFSVYKSS SMSAQQLIES VAQQVPHFGT EQDKAHCPFH  240
LKTGACRFGQ RCSRVHFCPD KSSTLLIKNM YNGPGLAWEQ DEGLEVCRNG AFHLRGNVYI  300
HYKSLDSAVV AYQSVNGRYF AGKQISCEFI NVTRWKVAIC GEYMKSRYKT CSRGTACNFI  360
HCFRNPGGDY EWADSDRPPP KFWARKMVAL FGYSDADDKP MVEENFGQWR NTSKMSLGDS  420
ERYGLRRSRS RGRDSDSGRR YDNENNVLDG TCRQKRTGDE DLCEENKNLR NYNPRRSRKW  480
DTESDGELLE REIDRDRHRG HTRHSSRQQN RDHMNKTYET ESDGDLSQRN RIAQHGTRKS  540
SSQQRKVESP DEYRDRENKN HEVNWDWSDR DRDKDAAYHD NGRHSGQKRK VRCRGDHKDI  600
KNRAHDTDGE RSDSNMKGDE HHSGRKSMGP SSYSSKASKF SNHGGRTTRS YSTDLSDDLL  660
ENNAERSPCH ARKRSKRLDE VSDISDDDRV PTLDMKHRRD HLSIEMREAD SLVENLKSRG  720
THESSSVGPD DIRFNSDVLT DKEDRWEPEN SSVENGIYHT FKRKAGSSES CDSGRPGPSK  780
GRDESSDFDS ELYYYGKIGR EKDEKSDRVT HSEHGKSRRR SRNKDRKLDS DNRPRQGSSQ  840
SSHRRHSSGL DGATDSSDGD RESVRKHKRH HADDASRKPE DANYTVDVLT RCGVSPSEVA  900
KKTIKIIPLK EPGEPAVVSI SISQINSMSE LCTVVPKDLL PLPAQENTLK RVVETLSRFD  960
KGKIPLLDPE EDMKIESSSY KKVSRRMEAL ENLFDRHEVA RTPLIEQKLK VFHMKQDLAA  1020
KIKSITKTMC SSTALAFKDE LKARKRVLRR LGYVTKDDVV ELKGKVACEI SSAEELTLTE  1080
LMFNGAFKDI KVEEMVSLLS CFVWQEKLKE AIKPREELDL LFSQLQDTAR SVADVQLECK  1140
PDIMEAVYAW AEGSKFYEIM SATPGFEGSL IRAIRRLEEV LQQLIQAAKS VGETELESKF  1200
EEAVWKIKRD IVFAASLYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6d6q_M3e-7588112196941045Exosome RNA helicase MTR4
6d6r_M3e-7588112196941045Exosome RNA helicase MTR4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107122KRKKQIEEEEEEERRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033225.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950772.10.0zinc finger CCCH domain-containing protein 5
TrEMBLA0A498HRR40.0A0A498HRR4_MALDO; Uncharacterized protein
STRINGXP_009338690.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-129C3H family protein