PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 796aa MW: 88952.7 Da PI: 6.6383 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.6 | 7.6e-21 | 641 | 737 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ ++ +++ Pbr032979.1 641 QKVLKQSDVGSLGRIVLPKKEAETHlpELDARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCNKYM 735 79*************************99999*********7778*********777777777777.********************..555888777 PP EE CS B3 94 vk 95 ++ Pbr032979.1 736 IR 737 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-28 | 633 | 746 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 3.88E-35 | 638 | 739 | No hit | No description |
SuperFamily | SSF101936 | 3.53E-23 | 639 | 735 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.715 | 640 | 742 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-21 | 640 | 742 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-17 | 641 | 736 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MKREQVQVQV PVLHHHQDLH AEDQEDTLGV DPREMWLDDS QETALLADIN DPSIFYNDHF 60 PPLPDFPCMS SSSSSSSTPA PVKPVTCSSS SSSVSSSSSA ASWAVLKSDA EPEDGERKQQ 120 PNQNSYHHQH SQIDDQTVDA HALSSTASME ISQPLDLSGG GGGIDCMDET ETFGYMDLFE 180 PNEFFDPSSI FQSDSLFMEQ FQQDQDNQQL AMAQLLQDHH ETVTTIQSNP QQQKQVVRHD 240 EENTNKDLSN EDKDPDDMAM VFLEWLRSNR ETVSAEDLRS VKIKKSTIEC AARRLGGGKE 300 AMKQLLKLVL EWVQTNHLQK RRSNSIITKD SNIITQQQYQ DPFLNPNPNP SSRVFESNPS 360 RNFTQTQWMA PPPHAAAYDP AAGGLLIPTP PPAPPPPATY PSMMGYMAAD PFGNGQSPYQ 420 TSPEYHHHMI ESGQPSWPSS PFGMGTAPYG SFPDNNIHLA PPLHHPQAFA GYGSQYQPYQ 480 YFPGNGEHQL MRLGSSATKE ARKKRMARQR RLVSHHRHHG HQQNSQQLNN QMPDHHHLQQ 540 TRLVGNTTDL NCTGAVPLQA NPGNWFYWPT ATAAPSPSAL AMMPSIMQEA APLPPVQQMD 600 QPASTQAQNY NHGRSAVQER QERQERRQGW KSEKNLKFLL QKVLKQSDVG SLGRIVLPKK 660 EAETHLPELD ARDGISIAME DIGTSRVWNM RYRYWPNNKS RMYLLENTGD FVRANGLQEG 720 DFIVIYSDVK CNKYMIRGVK VRQAGPKSER QAGPKSEGNK RPGKSQRNQH ASTPPGNNGS 780 SPSSATTAHK KERVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 6e-38 | 636 | 743 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 6e-38 | 636 | 743 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032979.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009372412.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 | ||||
Swissprot | Q01593 | 1e-171 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A498JT46 | 0.0 | A0A498JT46_MALDO; Uncharacterized protein | ||||
STRING | XP_009372412.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9448 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 5e-88 | B3 family protein |