PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032962.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 487aa    MW: 53003.7 Da    PI: 9.8987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032962.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.4e-122833231055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +rRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  Pbr032962.1 283 QRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIVYLKSLQ 323
                  69******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-16267339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-13272327No hitNo description
PROSITE profilePS5088814.1273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-14275328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9283323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDYDYLLPTT SALNRPRKST MPEDDIMELL WQNGQVVMQS QNQRSSVNSK RSHQSKYDVS  60
PLVDDPFSAG LLYPDSSTSE HRTPQVSGPA PASRPPIHRP RRTELQNFLQ SDRTNNNRPV  120
MSEMAPSSSK KSVVRETTTV VDSSETPLVG PSSRALDSRP DGAGGGLANG ARSLTAATAA  180
TSFPGKEVTT CEMSLTSSPG GSSASASEST EPESAPKPPR TADNRKRQRK GREAPAADDT  240
EFQSKDVEFE SGNGKKQVRG STSSTKKSRA AEVHNLSERN SVQRRRDRIN EKMKALQELI  300
PRCNKSDKAS MLDEAIVYLK SLQLQVQMMS MGYGMIPMMF PGVQQMMSVP MGMGIGMGMG  360
MGMEMAGISR PMMPFPNVIA GSRMPTAAAA HMGPRFPIPP FHMQPIPASD PTGVPAVNQT  420
DQMINSLGAQ NPNQSNMPNF ADPYQQFFSP QQMQLPLQHK QAMPQPTTGK PSSNRRPETH  480
ENHQSG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2558590.0KU255859.1 Malus domestica phytochrome-interacting factor (PIF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372305.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A498JXB90.0A0A498JXB9_MALDO; Uncharacterized protein
STRINGXP_009372305.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.37e-55phytochrome interacting factor 3-like 5