PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032787.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28991.3 Da    PI: 8.6902
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032787.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.6e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien   rqvtfskRrng+lKKA+ELSvLCdaevaviifs+++klye++s
  Pbr032787.2  9 KRIENAASRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKDKLYEFCS 59
                 79***********************************************96 PP
2K-box71.91.9e-2477171497
        K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                   ++++   e++ ++l+ e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++iR++K +ll+eq+e+l+ ke  l +en +Lr++
  Pbr032787.2  77 EQTNKvEVEQHVQHLKYESAIMAKKIEILEATQRKLLGNDLDSCLVEELQEMSSQLERSLRSIRERKAQLLMEQMENLKAKETLLLQENAKLREE 171
                  34444478999*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.609161IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-34389IPR002100Transcription factor, MADS-box
CDDcd002657.24E-42378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2285171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.31488182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVRGKIEMKR IENAASRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KDKLYEFCSS  60
DMRETLTRYR KYAKDHEQTN KVEVEQHVQH LKYESAIMAK KIEILEATQR KLLGNDLDSC  120
LVEELQEMSS QLERSLRSIR ERKAQLLMEQ MENLKAKETL LLQENAKLRE ESGAKLLMEH  180
SAQEKRGSAS VSCEKAGASA SVNYWKQSIM SSEVETELFI GPPIMRSVDR IAVYSNIHQI  240
NNNACQSSLK TIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-23185186MEF2 CHIMERA
6bz1_B1e-23185186MEF2 CHIMERA
6bz1_C1e-23185186MEF2 CHIMERA
6bz1_D1e-23185186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032787.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640110.0KP164011.1 Pyrus pyrifolia clone PpSOC1-2 SOC1-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499519.10.0PREDICTED: MADS-box protein AGL42-like isoform X1
RefseqXP_018499520.10.0PREDICTED: MADS-box protein AGL42-like isoform X2
SwissprotQ9FIS13e-75AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D4ZY441e-173A0A0D4ZY44_PYRPY; SOC1-like MADS-box protein
STRINGXP_009347901.11e-149(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-77AGAMOUS-like 42