PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032769.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 434aa    MW: 46981.2 Da    PI: 7.7585
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032769.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09111131526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+f+ + G C+yGd+CkF H+
  Pbr032769.1 111 VCNFWVQ-GNCSYGDKCKFLHS 131
                  7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4652349IPR000571Zinc finger, CCCH-type
SMARTSM003560.52448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7107131IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-7110130IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7110131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.9E-16131245IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509786.41E-46132185IPR017986WD40-repeat-containing domain
SMARTSM003201.9E-6137176IPR001680WD40 repeat
PfamPF004003.6E-5140176IPR001680WD40 repeat
PROSITE profilePS5008213.75144185IPR001680WD40 repeat
PROSITE profilePS5029419.565144393IPR017986WD40-repeat-containing domain
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
PRINTSPR003207.8E-6163177IPR020472G-protein beta WD-40 repeat
SMARTSM003205.6216253IPR001680WD40 repeat
SuperFamilySSF509786.41E-46223427IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.2E-31246427IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.011260297IPR001680WD40 repeat
PfamPF004000.11265297IPR001680WD40 repeat
PROSITE profilePS5008211.778267306IPR001680WD40 repeat
PRINTSPR003207.8E-6284298IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0088300337IPR001680WD40 repeat
PfamPF004000.081302336IPR001680WD40 repeat
PRINTSPR003207.8E-6324338IPR020472G-protein beta WD-40 repeat
SMARTSM003201.6341384IPR001680WD40 repeat
SMARTSM003201.5387424IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDVDGGGSKR VFHRLGGQQS DPSKNQKVCY HWRAGKCNRH PCPFLHRELP TPPQQGLNGT  60
ASTKRHHAFA ANTDGPSSRN RGPNNFNGGT SSTWGRTGGA NRVFVRKMEK VCNFWVQGNC  120
SYGDKCKFLH SWSMGDSFSL LTQLEGHQKV VSGIALPSGS DKLYTGSKDQ TVRVWDCASG  180
QCMGVINLGG EVGCMISEGP WIFVGIPEAV KAWNTQTNSE LSLSGPVGQV YAMVVGNDLL  240
FAGTQDGSIL AWKFNAVTNC FEPAASLIGH TLAVVSLVVG ANRLYSGSMD NSIKVWSLET  300
LQCIQTLTEH TAVVMSVLCW DQFLLSCSLD QQLKVWVATQ SGNLEATYTH TEENGLITLC  360
GMHDSEAKPV LLCACNDNTV RVYDLPSFSE RGKIFSKQEI RSIQVGPGGL FFTGDGTGQV  420
KVWKWTEPAA VTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-191324238323Tako8
6g6n_A2e-191324238323Tako8
6g6n_B2e-191324238323Tako8
6g6n_C2e-191324238323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341271.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A498KJU80.0A0A498KJU8_MALDO; Uncharacterized protein
STRINGXP_009341271.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1