PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032568.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 308aa    MW: 34653.5 Da    PI: 6.9394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032568.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.33.4e-15230254226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ + +tGtC+yG++C+FaHg
  Pbr032568.1 230 KTELCNKWEETGTCPYGENCQFAHG 254
                  9***********************9 PP
2zf-CCCH26.21.3e-08267292126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt lCr  +++G C+yG rC+F H+
  Pbr032568.1 267 YKTQLCRMVLAGGACPYGHRCHFRHS 292
                  9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-18225261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-11225260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629228256IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-9228255IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-12230254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-13262295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9262297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136266294IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5266293IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-6267292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MESNTNTANP NSPDSSREFG DDFDPMYRSL FPPKYTLPSS LSLTPSTRST SFSDSDSDDH  60
HRHSTTSHNL NQAQLVLEYQ ELRDHYDLCN SHLRNLTNEL DSLRRENAQL RSANTDLVKL  120
LSSQAAFQSC LLSSSSSSAF QSPMAASFLD DFRRLGFGYL SPHDGVISEE SSDISPTSVI  180
ERNRLVDTDR ISLPKSISVR SSTRPRVPNQ LASRPLTQSE MKVFNQGMLK TELCNKWEET  240
GTCPYGENCQ FAHGVRELRP VLRHPRYKTQ LCRMVLAGGA CPYGHRCHFR HSLTEQEKLQ  300
LAISESF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-23230295570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357776.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A498JAZ60.0A0A498JAZ6_MALDO; Uncharacterized protein
STRINGXP_009357776.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-58C3H family protein