PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr032490.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 316aa MW: 35699.9 Da PI: 6.5458

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr032490.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123	1.5e-38	34	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn+ k++k+l++ +++dam+++++++++ra+dPv G++++i +lq+ +e kael+ + Pbr032490.1 34 ACAACKYQRRKCASDCILAPYFPHDRQRQFLNAHKLFGVSNIKKIIKHLDQPDKDDAMRTIIFQSDVRANDPVGGCYRIICELQRLIEYNKAELDIVL 131 7*********************************************************************************************9887 PP DUF260 99 ee 100 ++ Pbr032490.1 132 HQ 133 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.113	33	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-36	34	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSSSSHSHKH THHISTTTTK TPPTKGNANA NTQACAACKY QRRKCASDCI LAPYFPHDRQ 60 RQFLNAHKLF GVSNIKKIIK HLDQPDKDDA MRTIIFQSDV RANDPVGGCY RIICELQRLI 120 EYNKAELDIV LHQLAICRAQ AQEVYQQQQI QMPEIGDQNA CDPSIKVDPW SLYGNPMGHF 180 YYIQQPQPPH HAVALQQEQP QQQQQQRVPY VFVQNNTNSN NNSDSTNGDP HPYPHQHLYE 240 DLSMWAMQDS VSCLDIKQCG GGMNGITNVC EDLKPFVDQI ACGDDHERNN GEVIDINGDH 300 QQRLLVTNTE LLMSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-23	23	128	3	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-23	23	128	3	105	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr032490.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341039.1	0.0	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A498IZR0	1e-177	A0A498IZR0_MALDO; Uncharacterized protein
STRING	XP_009341039.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-46	LOB domain-containing protein 22