PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032450.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 296aa    MW: 31523.1 Da    PI: 7.6934
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032450.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.44.5e-3061115257
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  ++vrY+eClkNhA+ +Gg a+DGC+Ef+++ g egt +alkCaAC+CHRnFHR+e 
  Pbr032450.1  61 KAVRYRECLKNHAVGIGGRALDGCCEFLAA-GPEGTLDALKCAACNCHRNFHRKEG 115
                  579**************************9.999********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.1E-2763114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2064116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2564114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.165114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-11205293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-20207294IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEFEDQEEHE EEMEMTANYD SLGNSVGGRV KMSSSGPDGL ALAAAAAAAA VATQQQQQPR  60
KAVRYRECLK NHAVGIGGRA LDGCCEFLAA GPEGTLDALK CAACNCHRNF HRKEGDPPGH  120
GLGVLTDAYG QLVPHHGQQH HPHFSPYYRT PAGYLHVAAH HRLLALPSTS GGGGTHSGGQ  180
EQDDDVSNPS GGGGGGGGSG GLGMGMGMHG TASSGKKRFR TKFSQEQKER MLSLAERLGG  240
RIQKQDEPAG QXXXXXXXXX XXXXXXXQFC NETGVNRHVL KVWMHNNKHT LGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-182172901875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032450.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385680.11e-145zinc-finger homeodomain protein 1-like isoform X1
RefseqXP_028965134.11e-145zinc-finger homeodomain protein 1-like isoform X2
SwissprotQ6YXH52e-69ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A498KI591e-146A0A498KI59_MALDO; Uncharacterized protein
STRINGXP_008385680.11e-145(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-51homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]