PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032434.9
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 741aa    MW: 80907.6 Da    PI: 6.2126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032434.9genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1964119156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r++ +++t+ q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Pbr032434.9  64 RKRYHRHTQRQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119
                  789999***********************************************998 PP
2START214.14.8e-672574791206
                  HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  ela +a++el+++a+a++p+Wv         e++n+de+l++f+++ +      ++ea+r++++v+m++++lve+l+d++ qW++ +     +a+tl+
  Pbr032434.9 257 ELAVAAMEELIRMAEAGDPLWVPGDhnsihqEILNEDEYLRTFPRGIGpkplgLKSEASRETALVIMNHVNLVEILMDVN-QWSTVFCgivsRAMTLD 353
                  57899*****************87778899***************999********************************.******99999****** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                   +s+g      galq+m+ae+q++splvp R+ +fvRy++q  +g+w++vdvS+d+ ++ p    v R++++pSg+li++++ng+skv+wvehv++++
  Pbr032434.9 354 ILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQNVDGTWAVVDVSLDNLRPSP----VSRSRRRPSGCLIQELQNGYSKVIWVEHVEVDD 447
                  ***********************************************************98....79******************************* PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                  + +h+++r+lv+sgla+gak+wvatl+rqc++
  Pbr032434.9 448 SAVHNIYRPLVNSGLAFGAKRWVATLDRQCQR 479
                  ******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-2245119IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1947121IPR009057Homeodomain-like
PROSITE profilePS5007116.81161121IPR001356Homeobox domain
SMARTSM003894.4E-1962125IPR001356Homeobox domain
CDDcd000861.00E-1863122No hitNo description
PfamPF000462.8E-1764119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
SuperFamilySSF559615.98E-34248481No hitNo description
PROSITE profilePS5084843.936248482IPR002913START domain
CDDcd088751.62E-126252478No hitNo description
SMARTSM002347.6E-69257479IPR002913START domain
PfamPF018525.3E-56258479IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-5361479IPR023393START-like domain
SuperFamilySSF559612.05E-26500731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MFQPSMFENH ILDHMTTSST HKTSDSTGRL LDDDFETKSG TETTMDAPSG DEQDPNATGP  60
RPKRKRYHRH TQRQIQEMEA FFKDCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA  120
QHERHENSIL KSENDKLRAE NNRYKEALAN ATCPNCGGPA AIGEMSFDEQ HLRIENARLH  180
EEIDKISSIA AKYVGKPLTS SFSSHMSSHV PSGRSIDLGV GSFGTQPGFV GEMYGSSSDL  240
LRSVSVPTEA DKPMIVELAV AAMEELIRMA EAGDPLWVPG DHNSIHQEIL NEDEYLRTFP  300
RGIGPKPLGL KSEASRETAL VIMNHVNLVE ILMDVNQWST VFCGIVSRAM TLDILSTGVA  360
GNYNGALQVM TAEFQVPSPL VPTRENYFVR YCKQNVDGTW AVVDVSLDNL RPSPVSRSRR  420
RPSGCLIQEL QNGYSKVIWV EHVEVDDSAV HNIYRPLVNS GLAFGAKRWV ATLDRQCQRL  480
ASSMASKLPA GDLCVITSTE GRKSMLKLAQ RMVMSFCTGV GASTAHAWTT LSATGSDDVR  540
VMTRKSMDDP GRPPGIVLSA ATSFWIPVPP KRVFNFLRDE NSRSEWDILS NGGLVQEMAH  600
IANGRDPGNC VSLLRVNSAN SSQSNMLILQ ESCTDSTGSY VIYAPVDIVA MNVVLSGGDP  660
DYVALLPSGF AILPDGPAGS AGGGALDVGS GGSLLTVAFQ ILVDSIPTAK LSLGSVATVN  720
NLIKCTVERI RAAVTCEQNP *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032434.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340946.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_018499434.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A498IV160.0A0A498IV16_MALDO; Uncharacterized protein
STRINGXP_009340946.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]