PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032366.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 358aa    MW: 38707.7 Da    PI: 8.7034
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032366.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.55.8e-3875135262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e+alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  Pbr032366.1  75 PETALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135
                  67899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3259128IPR003851Zinc finger, Dof-type
PfamPF027014.3E-3278133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4579133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWQQQQT NHHQQGGGSD QNNPQLPLVP SSEARCTSVD GGGGLGSIKP  60
GSMCDRARMA KMPQPETALK CPRCESTNTK FCYFNNYNLS QPRHFCKTCR RYWTRGGALR  120
SVPVGGGCRR NKRSKGGNSS RSKSPGAAGN SSSSTVNSSN SCSASDNIIG HLTHPPPPHQ  180
LPFLPSLHHL PDYGSGDMLG LNNFGINQPG DVEFQHHQYG SDRFSARPNI LGMNNMSNTE  240
HWRSSLLQQQ FPNFLVNLGQ PTSTTHGFYQ FDGGDHQNVG QLPISKPLDH SAGNGVTSTQ  300
MANVKMEQNQ ALNLSRNFLG SLGNDHQYWG SCTTGTGGNA WTDLSGFTTS SSTSHLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357720.10.0PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A498JFY80.0A0A498JFY8_MALDO; Uncharacterized protein
STRINGXP_009357720.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.13e-40Dof family protein