PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 127aa MW: 14654.9 Da PI: 10.2429 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 44.2 | 3.2e-14 | 49 | 73 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+y d+C+FaHg Pbr032194.1 49 KTELCNKWEETGTCPYRDNCQFAHG 73 9***********************9 PP | |||||||
2 | zf-CCCH | 28 | 3.7e-09 | 86 | 111 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr +++G C+yG rC+F H+ Pbr032194.1 86 YKTQLCRMVLAGGACPYGHRCHFRHS 111 9**********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-18 | 43 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-11 | 44 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-10 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-10 | 81 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-14 | 81 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.136 | 85 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-6 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MERNRFIDAD RISLPKSISV RSSNRPRVPS VSRPMTQSQM KVFNQGMLKT ELCNKWEETG 60 TCPYRDNCQF AHGVRELRPV MRHPRYKTQL CRMVLAGGAC PYGHRCHFRH SLTEQEKLQL 120 AVSDSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-23 | 49 | 114 | 5 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032194.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344133.1 | 8e-92 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_018499532.1 | 2e-92 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 4e-49 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A498HHL7 | 6e-86 | A0A498HHL7_MALDO; Uncharacterized protein | ||||
STRING | XP_009341326.1 | 7e-92 | (Pyrus x bretschneideri) | ||||
STRING | XP_009344133.1 | 3e-91 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 6e-49 | C3H family protein |