PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr032113.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 737aa MW: 79982.2 Da PI: 6.5047

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr032113.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	307	327	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Pbr032113.1 307 PCPDFRK-GACRRGDMCEYAHG 327 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.3E-19	43	195	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.71E-19	45	180	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.8E-11	83	154	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.94E-17	86	165	No hit	No description
PROSITE profile	PS50297	17.714	87	180	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0014	87	117	IPR002110	Ankyrin repeat
PRINTS	PR01415	8.2E-5	88	103	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.568	122	157	IPR002110	Ankyrin repeat
SMART	SM00248	3.9E-5	122	154	IPR002110	Ankyrin repeat
PRINTS	PR01415	8.2E-5	141	155	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	302	328	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.0E-5	307	327	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	307	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-4	307	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-4	335	365	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	52	337	360	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MCNGSDKIKP NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIESFKRS 60 IEQDPSAIDE IGLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVVKLILSL SDADVNQACG 120 HDRSTALHCA ASGGAENAVD CVKLLLEAGA DPNSLDANGH RPIDVIVVPP RLQNVKLAIE 180 ELLVINGTAG EKTLTVSTRT IHSTSPPLSA SPENGSPSAL DFTCSPTKSK FYNSLSSTSE 240 KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTTCA RRVCFFAHTT 360 EELRPLYVST GSAVPSPRSS TSGASAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN 420 GMSHSSLGWP QPNVPALHLP GSNLQSSRLR SSLCARDMPA DDFDLLPEFD MQQQQLQQQQ 480 LLNELSCLSQ PSLSNNSLNR SGRRTTLTPS NLDDIFSAES LSPRYSDQSL QSGVFSPTHK 540 SAVLNQFQQQ QSILSPIHTN FSPKTVDHAL LQASYGGPSS GRMSPRNVEP ISPMGSRVSM 600 LAQREKQQQF RSLSSRELGS SSASIVGSSP NSWSKWGSSN GKPDWAVSTD ELGKLRRSSS 660 FELGNNGEEP DLSWVQSLVK ESPTDIKEKQ TPSSAVTATG SSNNGPSANS QREAVDHAVL 720 GAWIDQMHLD LVAQQN*

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MCNGSDKIKP NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIESFKRS  60
IEQDPSAIDE IGLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVVKLILSL SDADVNQACG  120
HDRSTALHCA ASGGAENAVD CVKLLLEAGA DPNSLDANGH RPIDVIVVPP RLQNVKLAIE  180
ELLVINGTAG EKTLTVSTRT IHSTSPPLSA SPENGSPSAL DFTCSPTKSK FYNSLSSTSE  240
KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTTCA RRVCFFAHTT  360
EELRPLYVST GSAVPSPRSS TSGASAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN  420
GMSHSSLGWP QPNVPALHLP GSNLQSSRLR SSLCARDMPA DDFDLLPEFD MQQQQLQQQQ  480
LLNELSCLSQ PSLSNNSLNR SGRRTTLTPS NLDDIFSAES LSPRYSDQSL QSGVFSPTHK  540
SAVLNQFQQQ QSILSPIHTN FSPKTVDHAL LQASYGGPSS GRMSPRNVEP ISPMGSRVSM  600
LAQREKQQQF RSLSSRELGS SSASIVGSSP NSWSKWGSSN GKPDWAVSTD ELGKLRRSSS  660
FELGNNGEEP DLSWVQSLVK ESPTDIKEKQ TPSSAVTATG SSNNGPSANS QREAVDHAVL  720
GAWIDQMHLD LVAQQN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr032113.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM253564	0.0	FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009340782.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_009340785.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	D9ZIV2	0.0	D9ZIV2_MALDO; C3HL domain class transcription factor
STRING	XP_009340782.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009340785.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]