PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032061.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 289aa    MW: 30856.1 Da    PI: 7.0925
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032061.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.7e-31110166259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +++rY+eClkNhAa+ Ggh++DGCgEfmps g+e ta alkCaAC+CHRnFHR+e + 
  Pbr032061.1 110 SRIRYRECLKNHAANSGGHVLDGCGEFMPS-GDEDTAGALKCAACECHRNFHRKEIDG 166
                  579**************************9.7777*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-21111171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.4E-29112164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.2E-29113164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.96114163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MELRGRDNKV IGRMPSTLTY TPPPHRDSSS SKLSSSPAFS SAGHHGSNTI LFTHPPHQTL  60
DRSRRDPDPN PDLVPSPVVV TPSATATIAS GSNFKAPPAP PPPPPSAAAS RIRYRECLKN  120
HAANSGGHVL DGCGEFMPSG DEDTAGALKC AACECHRNFH RKEIDGEYVS NNYYVLNHQQ  180
QNSRRDSALT RLPVLASPPR ALPVYHSTAG GPSQPMMMTF GGGGGVVAES SSEDLNMYNK  240
LFRGANYAEE AQGSKKRFRT KFSQEVQSRA EGEDDGCGGE VGVEDPEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340741.10.0PREDICTED: LOW QUALITY PROTEIN: zinc-finger homeodomain protein 6
TrEMBLA0A314YYR69e-77A0A314YYR6_PRUYE; Uncharacterized protein
STRINGXP_009340741.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-35homeobox protein 24