PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr031752.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 37041.3 Da PI: 6.6118 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.3 | 9.9e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ + e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s Pbr031752.1 7 VPPGFRFHPTDEELVDYYLRKKVTSRRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS- 102 69****************************.9***************954555542556**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Pbr031752.1 103 KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-61 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.873 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-29 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
METFSHVPPG FRFHPTDEEL VDYYLRKKVT SRRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKKIAS MRNKMSEHES PCWYDDQVSF 180 MPDLDSPGHN SSSMNMNMVP YHHLPSYPCK KELDHLPFQV PHEHFFQLPL LGSPKLLQSS 240 SATAVSSSNS MAPHAYGIDI NHACTFQPSD QDQNFHGVVY GNSSNDDHQR TVDQMTDWRA 300 LDKFVASQLS QDDASKGNSY S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-50 | 2 | 157 | 10 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr031752.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340590.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-131 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | M5X778 | 0.0 | M5X778_PRUPE; Uncharacterized protein | ||||
STRING | XP_009340590.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-120 | NAC 007 |
Publications ? help Back to Top | |||
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