PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031702.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 302aa    MW: 32994.5 Da    PI: 9.2292
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031702.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.7e-32146202158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++Il+RRq+Rakle+++kl  ksrkpylheSRh hAl+R RgsgGrF
  Pbr031702.1 146 DGPIYVNAKQYRGILRRRQSRAKLEAQNKL-LKSRKPYLHESRHLHALNRVRGSGGRF 202
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-35144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.677145205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-23148170IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27148202IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-23179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSWNPSERQI SESLSKDVSF KVVFPPQGHH DAKHLGLQLQ TDQGSSSTTL SIGHSQGQCN  60
SSESGEDETY GKGADGKLKP VFLPSNQDLM SNPSQVGYSN VVGCIPYPYV GPYFSGFATA  120
YGSQAMSHML GIVPTRVPLP PDLAQDGPIY VNAKQYRGIL RRRQSRAKLE AQNKLLKSRK  180
PYLHESRHLH ALNRVRGSGG RFLSTKRQSD QNASSSTHYV SDSLSVHQKD TGDTESHHSE  240
SSEFLPSVAI HSDMTSVSNT NDNFRQADRR FSGIPPHMSG AMEFHGGFMH AGNQHSASVV  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20146206262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031702.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340454.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
RefseqXP_018499326.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLA0A498KFE51e-174A0A498KFE5_MALDO; Uncharacterized protein
STRINGXP_009340453.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-45nuclear factor Y, subunit A3