PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031401.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 345aa    MW: 37972.9 Da    PI: 7.4736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031401.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.4e-1091115126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  Pbr031401.1  91 FKTKLCCKFRA-GTCPYVTNCNFAHS 115
                  69*********.*************8 PP
2zf-CCCH18.63.2e-06164189126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  Pbr031401.1 164 YKGRHCKKFYTEEGCPYGDNCTFLHD 189
                  78888********************7 PP
3zf-CCCH43.55.1e-14224249126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  Pbr031401.1 224 WKTRICNKWELTGYCPFGSKCHFAHG 249
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.65E-888121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-1488123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13190117IPR000571Zinc finger, CCCH-type
SMARTSM003560.00390116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-791115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-10161191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-8162191IPR000571Zinc finger, CCCH-type
SMARTSM003560.058163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23163191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-16220253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-10221254IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422223251IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11224249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDYGRESNVV HVITGNSGGD IWSSDQAVWA TEDEYRVWNN GDVLADTMSN SNYDQRQSQS  60
RSGSEPPNKK SRNSQDATSS NRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKAVS SEPREEYQIP IVSTGYGVET PRSYKGRHCK KFYTEEGCPY  180
GDNCTFLHDE QSKNRESVAI SLGPGGYGGG AAAANGANNK PSNWKTRICN KWELTGYCPF  240
GSKCHFAHGV AELHRYGGGL VEGETRDSSS VAPDNKQGVM PSKTPGDAVA VSVPLVSYSD  300
VYHLGVPSQR SSIVIQRSGP RAHQKWKGPD KISRIYGDWI DDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031401.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431653e-34AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340182.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-133C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A498HM300.0A0A498HM30_MALDO; Uncharacterized protein
STRINGXP_009340182.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-128C3H family protein