PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr031262.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 106aa MW: 12046.8 Da PI: 10.505

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr031262.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.8	7.6e-10	11	60	3	51
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE.EEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaeva.viifsstgklyeyss 51 i+ + r t+ kR++ + K E+ +LC++ ++ vi+ s+ k+ ++s Pbr031262.1 11 ISHEPSRRATLKKRKASFFRKLDEITTLCGVIACaVIYNTSDTKVDVWPS 60 777788999*********************87762677778888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.79E-13	1	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.778	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.9E-4	1	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-10	11	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MAKNTTKHEL ISHEPSRRAT LKKRKASFFR KLDEITTLCG VIACAVIYNT SDTKVDVWPS 60 HRKHFMYSKN SRIYLKKGKD YDSLNGSQGQ ITRKITQYAA VHSEA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr031262.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028949364.1	2e-50	agamous-like MADS-box protein AGL86
TrEMBL	M5XZI5	2e-28	M5XZI5_PRUPE; MADS-box protein 29
STRING	XP_009357208.1	2e-52	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14464	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	2e-13	AGAMOUS-like 87