PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr031181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 733aa MW: 79629.7 Da PI: 6.463 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 307 | 327 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Pbr031181.1 307 PCPDFRK-GACRRGDMCEYAHG 327 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 6.6E-18 | 40 | 181 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.87E-17 | 45 | 180 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.01E-15 | 86 | 165 | No hit | No description |
PROSITE profile | PS50297 | 16.467 | 87 | 180 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.014 | 87 | 117 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 5.8E-10 | 87 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.3E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.007 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 302 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-5 | 307 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 335 | 365 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 68 | 337 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MCNGSERIKP NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIQSFKRS 60 IEHDPSGIDE IGLWYCRQKG SKQMVNEQRS PLMVAATYGS IDVMKLILSL SDADVNQACG 120 RDRSTALHCA ASGGAENAVD CVKLLLGAGA DPNSVDANGH HPIDVIVVPP RLQNIKLALE 180 ELLMINGSAG EQTLTVSTRT VHSSSPPLSA SPENGSPSAF DFNCSPTKSK FYNSLSSASE 240 KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA RRVCFFAHTT 360 EELRPLYVST GSAVPSPRSS TSGASAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN 420 GMSHSSLAWP QPNVPALHLP GSNFQSSRLR SSLCARDIMP SDDFDLLPEF DMQQQQLLNE 480 LSCLSQPSLS NNSLNRSGRR TTLTPSNLDD LFSAESLSPR YSEQSLQSGV FSPTHKSAVL 540 NQFQQQQSML SPIHTNFSPK AVDHALLQAS YGGPSSGRMS PRNVEPISPM GSRVSMLAQR 600 EKQQQFRSLS SRELGSNSAS IVGSSPNSWS KWGSSNGKPD WAVTTDELGK LRRSSSFELG 660 NNEEEPDLSW VQSLVKESPT EIKEKQTPSS GGTATGSSNE GSNANSQRES VDHAVLGAWI 720 DQMHLDLVAQ QN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr031181.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM253563 | 0.0 | FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19. | |||
GenBank | FM253564 | 0.0 | FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340157.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_018499263.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | D9ZIV5 | 0.0 | D9ZIV5_MALDO; C3HL domain class transcription factor | ||||
STRING | XP_009340157.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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