PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031107.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 361aa    MW: 38432.5 Da    PI: 8.8628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031107.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11293338655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Pbr031107.2 293 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 338
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14290352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-11291342No hitNo description
Gene3DG3DSA:4.10.280.107.4E-13292349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MYPTNSSSSP QKPMAPRPST TGLTRYGSAP GSLLNSAVDS VMGAAADREF SSLRPQHLRG  60
HYFSGDGGGD SPSFTSSESS FKVNSSNGSH RDTSTTKPLL RSHGLNEIGS SNSSSCSSTS  120
SAALVRQRSS PAGFLSHLTA SESNGGFSVT RGTGSYRSQG GNNGGPGVTR LKSQLSFSGQ  180
DSLSQISEVS QNAGEGVSSK NGHHSAMHSY PATSFGMESW DNTNSIVFSA PPSKRAKNMD  240
VDIFDCLNTL ESQFSLPQTS LEMATVEKLL HIPEDSVPCK IRAKRGCATH PRSIAERERR  300
TRISGKLKKL QDLVPNMDKQ TSYADMLDLA VQHIKGLQNQ IQDLHNDLEH CTCGCKPTAK  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031107.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339879.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1021e-98BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A498K4W70.0A0A498K4W7_MALDO; Uncharacterized protein
STRINGXP_009339879.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]